FC930816

Overview
NameFC930816
Unique NameFC930816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15219 contig Ccv1_Contig15219:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_MYXXA (Pyrophosphate-energized proton pump (Fragment) OS=Myxococcus xanthus GN=hppA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.869e-58
Identity = 123/242 (50.83%), Postives = 161/242 (66.53%), Query Frame = 3
Query:    9 IDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAF---VSRAAIS------TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAG-ASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            +DAY PISDNAGGI+EM+G+   +R  TD LDA GNTTAAIGKGFAIGSA L  +ALF AF   V+   I+      ++ +  P V +GL++G++LP+   A TM +VG AA  +VEE+ RQF  IPGLME  A PD    V I+T ++++EM+ PG + +  P +VG   G   L+G+LAGSLV G  +A+  +N GGAWDNAKK+IE G    HA     KGS  HKAAV+GD +GDP +
Sbjct:   11 VDAYGPISDNAGGISEMSGLGPEVRAITDELDAVGNTTAAIGKGFAIGSATLTVIALFSAFNLEVNHTRIAAGLPEMSLQLTNPNVIVGLLLGSILPFLVGASTMLAVGRAAGAIVEEIGRQFREIPGLMELKADPDPKKIVDIATKSALQEMVFPGIIAVAAPPLVGYLLGPGALAGLLAGSLVVGATMALYMANAGGAWDNAKKFIEKGKLPGHA-----KGSAVHKAAVVGDMVGDPFK 247          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: AVP2_ARATH (Pyrophosphate-energized membrane proton pump 2 OS=Arabidopsis thaliana GN=AVPL1 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.489e-57
Identity = 119/258 (46.12%), Postives = 160/258 (62.02%), Query Frame = 3
Query:    9 IDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV------SRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLRTHLDHHLH 728
            +D + PI+DNAGGI EM+     +RE TD LDA GNTT A  KGFAIGSAAL S  LF A++      +  +   VD+  P+VF+G ++GAML + FSA    +VG  A ++V EVRRQF   PG+ME   KPDY+ CV I   A+++EMI PGAL + +P++VG+ F            G + ++ +L  + V G+ +A+  +  GGAWDNAKKYIE GA      LG KGS+ HKAAV GDT+GDP +      +H
Sbjct:  533 MDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFANVSFKEVDIAIPEVFVGGLLGAMLIFLFSAWACAAVGRTAQEVVNEVRRQFIERPGIMEYKEKPDYSRCVAIVASAALREMIKPGALAIASPIVVGLVFRILGYYTGQPLLGAKVVASMLMFATVCGILMALFLNTAGGAWDNAKKYIETGA------LGGKGSEAHKAAVTGDTVGDPFKDTAGPSIH 784          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA1_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.107e-56
Identity = 126/261 (48.28%), Postives = 165/261 (63.22%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA-------FVSRAAISTVDVL------TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG---------------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A       F+++ +   V V        P V +GL+ G +LPY F AM M +VG AA  +VEEVRRQF   PG+M+GT KPDY   V + T A+IKEMI P  L +L+P+ V  +F +  ++G               +L G +V+G+ +AIS ++ GGAWDNAKKYIE G        G KGSD HKAAV GDT+GDP +
Sbjct:  427 ALDAFGPVTDNAGGIAEMAGLPKEVRKSTDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYNEDLKFFIAQKSPYFVGVAPDFSLNNPYVVVGLLFGGLLPYLFGAMGMTAVGRAAGAIVEEVRRQFREKPGIMKGTDKPDYGKAVDLLTKAAIKEMIIPSLLPVLSPIFV--YFAIYAIAGGGAAGKSAAFSAVGAMLLGVIVTGLFVAISMTSGGGAWDNAKKYIEDGHH------GGKGSDAHKAAVTGDTVGDPYK 679          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_BRAJA (Pyrophosphate-energized proton pump OS=Bradyrhizobium japonicum GN=hppA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 126/263 (47.91%), Postives = 166/263 (63.12%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA-------FVSRAAISTV--------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG---------------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A       FV+ +A  T          +  P V +GL+ G +LPY F AM M +VG AA  +VEEVRRQF   PG+M+GT KPDY   V + T A+IKEMI P  L +L+P++V  +F +  ++G               +L G +V+G+ +AIS ++ GGAWDNAKKYIE G        G KGSD HK+AV GDT+GDP +
Sbjct:  425 ALDAFGPVTDNAGGIAEMAGLPKEVRKSTDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYNQDLKFFVADSAHHTYFAGVNPDFSLNNPYVVVGLLFGGLLPYLFGAMGMTAVGRAASAIVEEVRRQFREKPGIMQGTDKPDYGKAVDLLTKAAIKEMIIPSLLPVLSPIVV--YFLIYAIAGGGATGKSAAFSAVGAMLLGVIVTGLFVAISMTSGGGAWDNAKKYIEDG------HYGGKGSDAHKSAVTGDTVGDPYK 679          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: AVPX_ARATH (Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.888e-56
Identity = 119/258 (46.12%), Postives = 158/258 (61.24%), Query Frame = 3
Query:    9 IDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV------SRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLRTHLDHHLH 728
            +D + PI+DNAGGI EM+     +RE TD LDA GNTT A  KGFAIGSAAL S  LF A++      +  +   VD+  P+VFIG ++GAML + FSA    +VG  A ++V EVRRQF   PG+M+   KPDY  CV I   ++++EMI PGAL +++P+ VG  F            G + ++ +L  + V G+ +A+  +  GGAWDNAKKYIE GA      LG KGSD HKAAV GDT+GDP +      +H
Sbjct:  533 MDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFANVSFKEVDIAIPEVFIGGLLGAMLIFLFSAWACAAVGRTAQEVVNEVRRQFIERPGIMDYKEKPDYGRCVAIVASSALREMIKPGALAIISPIAVGFVFRILGYYTGQPLLGAKVVAAMLMFATVCGILMALFLNTAGGAWDNAKKYIETGA------LGGKGSDSHKAAVTGDTVGDPFKDTAGPSIH 784          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_CAUCR (Pyrophosphate-energized proton pump OS=Caulobacter crescentus GN=hppA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.651e-55
Identity = 117/259 (45.17%), Postives = 160/259 (61.78%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALF----------------GAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R  TDALDA GNTT A+ KG+AIGSA L +L LF                G+F       T D+  P V +GL+ G +LP+ F  ++M +VG AA  +V EVRRQF   PG+M G  KP+Y   V I T A+I+EMI P  L +++P  V +FF ++ ++G          +L G +V+G+ +AIS ++ GGAWDNAKK IE G ++    L  KG + HKAAV GDT+GDP +
Sbjct:  427 ALDAFGPVTDNAGGIAEMAGLPPEVRVTTDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYTEDLKFFSENAAPGSFFHGMGAVTFDLSNPYVVVGLLFGGLLPFLFGGLSMTAVGRAAESVVAEVRRQFRDNPGIMTGEVKPEYGKAVDILTKAAIREMIVPSLLPVVSP--VALFFVIQAIAGKVDAFAALGAMLMGVIVTGLFVAISMTSGGGAWDNAKKVIEEGFTDKNGVLHKKGGETHKAAVTGDTVGDPYK 683          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_RHILO (Pyrophosphate-energized proton pump OS=Rhizobium loti GN=hppA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 119/260 (45.77%), Postives = 159/260 (61.15%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R  TDALDA GNTT A+ KG+AIGSA L +L LF A+ +                       D+  P V  GLI G ++PY F  + M +VG AA  +VEEVR+QF   PG+M GT+KP+YA  V + T A+I+EMI P  L +L PL+V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP +
Sbjct:  428 ALDAFGPVTDNAGGIAEMAGLPKEVRHSTDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYSNDLKFFAANGDKYPYFQGMGEISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAAGAIVEEVRKQFREDPGIMAGTSKPNYARAVDLLTKAAIREMIIPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFTDKDGVKHLKGSEAHKASVTGDTVGDPYK 685          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_HELCL (Pyrophosphate-energized proton pump (Fragment) OS=Heliobacterium chlorum GN=hppA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 109/197 (55.33%), Postives = 137/197 (69.54%), Query Frame = 3
Query:   39 AGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIS------------TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNA 593
            AGGIAEMA +   +R++TD LDA GNTTAA+ KGFAIGSAAL +LALF AF      S             +++L PK+ IGL +G  +P+ F A  M++VG AA +M+ EVRRQF  IPGLMEG AKPDYA CV IST A+I++MI PG L ++TPLIVG  FG + L G+LAG  V+GV +AI  +N GGAWD+A
Sbjct:    1 AGGIAEMAELGPEVRKKTDKLDAVGNTTAAVAKGFAIGSAALTALALFTAFAEEVVKSPGVSSALHGSHFVLNLLEPKIIIGLFIGGTVPFLFCAFAMEAVGKAAFEMIGEVRRQFREIPGLMEGKAKPDYARCVDISTRAAIRQMIAPGLLAVITPLIVGFGFGAQALGGMLAGVTVAGVLLAIFMANAGGAWDHA 197          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_AGRT5 (Pyrophosphate-energized proton pump OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hppA PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.142e-54
Identity = 116/260 (44.62%), Postives = 158/260 (60.77%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTVD----------------VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A+ +  +    +                +  P V  GL+ G ++PY F  + M +VG AA  +VEEVRRQF   PG+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G  +       KGS+ HKA+V GDT+GDP +
Sbjct:  430 ALDAFGPVTDNAGGIAEMAGLDPDVRKATDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYANDLSYFAANGDTYPYFKDIGEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFIDKDGVRHVKGSEAHKASVTGDTVGDPYK 687          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_BRUSU (Pyrophosphate-energized proton pump OS=Brucella suis GN=hppA PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 117/260 (45.00%), Postives = 158/260 (60.77%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A+ +  A                    D+  P V  GLI G ++PY F  M M +VG A   +V+EVRRQF   PG+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP +
Sbjct:  432 ALDAFGPVTDNAGGIAEMAGLDPEVRKATDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGQIYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHMKGSEAHKASVTGDTVGDPYK 689          
The following BLAST results are available for this feature:
BLAST of FC930816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA_MYXXA5.869e-5850.83Pyrophosphate-energized proton pump (Fragment) OS=... [more]
AVP2_ARATH6.489e-5746.12Pyrophosphate-energized membrane proton pump 2 OS=... [more]
HPPA1_RHOPA1.107e-5648.28Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]
HPPA_BRAJA1.446e-5647.91Pyrophosphate-energized proton pump OS=Bradyrhizob... [more]
AVPX_ARATH1.888e-5646.12Pyrophosphate-energized membrane proton pump 3 OS=... [more]
HPPA_CAUCR4.651e-5545.17Pyrophosphate-energized proton pump OS=Caulobacter... [more]
HPPA_RHILO2.308e-5445.77Pyrophosphate-energized proton pump OS=Rhizobium l... [more]
HPPA_HELCL3.937e-5455.33Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_AGRT55.142e-5444.62Pyrophosphate-energized proton pump OS=Agrobacteri... [more]
HPPA_BRUSU6.715e-5445.00Pyrophosphate-energized proton pump OS=Brucella su... [more]

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Properties
Property NameValue
Genbank descriptionC34109D01EF PostHarvP1 Citrus clementina cDNA clone C34109D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930816 ID=FC930816; Name=FC930816; organism=Citrus clementina; type=EST; length=739bp
GATAGGCTATTGATGCATATGCTCCCATCAGTGACAATGCTGGAGGCATT
GCTGAGATGGCAGGCATGAGCCACAGAATCAGAGAGAGAACTGATGCTCT
TGATGCTGCAGGAAACACCACTGCAGCTATTGGAAAGGGTTTCGCCATTG
GTTCTGCAGCTCTTGTGTCGCTAGCCCTCTTTGGTGCCTTTGTGAGCCGT
GCAGCTATTTCAACTGTTGATGTGTTGACTCCAAAAGTGTTTATTGGTTT
GATTGTTGGTGCTATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGA
GTGTGGGAAGTGCAGCTCTTAAAATGGTTGAGGAAGTGCGCAGGCAATTT
AACACCATCCCTGGTCTTATGGAAGGCACTGCCAAACCTGATTATGCTAC
CTGTGTTAAGATCTCCACCGATGCATCCATCAAAGAGATGATCCCACCTG
GTGCCCTTGTCATGCTTACACCCCTTATTGTTGGTATCTTTTTTGGTGTG
GAAACTCTCTCTGGGGTCCTTGCCGGTTCCCTTGTCTCAGGTGTACAGAT
TGCTATCTCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGT
ACATTGAGGCTGGCGCTTCAGAGCACGCCAGAACTCTTGGTCCAAAAGGA
TCAGATCCACACAAGGCTGCGGTCATTGGTGACACAATTGGGGATCCATT
AAGGACACATCTGGACCATCACTTACATCCTAATCAGCT
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