FC930816

Overview
NameFC930816
Unique NameFC930816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15219 contig Ccv1_Contig15219:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_BRUME (Pyrophosphate-energized proton pump OS=Brucella melitensis GN=hppA PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 117/260 (45.00%), Postives = 158/260 (60.77%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A+ +  A                    D+  P V  GLI G ++PY F  M M +VG A   +V+EVRRQF   PG+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP +
Sbjct:  432 ALDAFGPVTDNAGGIAEMAGLDPEVRKATDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGQIYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHMKGSEAHKASVTGDTVGDPYK 689          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_OCHA4 (Pyrophosphate-energized proton pump OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hppA PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.771e-54
Identity = 118/260 (45.38%), Postives = 158/260 (60.77%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEMAG+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A+ +  A                    D+  P V  GLI G ++PY F  M M +VG A   +V+EVRRQF   PG+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP +
Sbjct:  432 ALDAFGPVTDNAGGIAEMAGLDPEVRKATDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGQTYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTRAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHLKGSEAHKASVTGDTVGDPYK 689          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_PYRAE (Pyrophosphate-energized proton pump OS=Pyrobaculum aerophilum GN=hppA PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.145e-53
Identity = 110/258 (42.64%), Postives = 159/258 (61.63%), Query Frame = 3
Query:   12 DAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA------------------AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLRTHLDHHLHP 731
            D+Y P+SDNAGG+ EMAG+   +RE TD LD+ GNTT A  KG+AI SAAL +L LF A +                     ++S + ++   V IG  +G  L Y+FS+ T+++VG  A+++VEE+RRQF   PG++E   +PDYA  V I+T  ++ E + PG   ++ PLI G+  G   L+G++ G++V+GV  A+  +N GGAWDNAKKYIE          G K ++ HKAAVIGDT+GDP++  +   L+P
Sbjct:  439 DSYGPVSDNAGGVVEMAGLPDEVREITDVLDSVGNTTKATTKGYAIASAALAALVLFIALIFEIVYSASKILGKGIVDMISESLSGLQLINANVLIGAFLGVALVYFFSSRTLEAVGRTAMEIVEEIRRQFREKPGILEWKEQPDYARVVDIATRRALGEFLIPGLAAIVLPLITGLLLGWNALAGLIMGAIVAGVPRALLMANAGGAWDNAKKYIE--------IQGLKKTEMHKAAVIGDTVGDPMKDTVGPSLNP 688          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_RHIME (Pyrophosphate-energized proton pump OS=Rhizobium meliloti GN=hppA PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.496e-53
Identity = 118/260 (45.38%), Postives = 160/260 (61.54%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAA--------------ISTV--DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            A+DA+ P++DNAGGIAEM+ +   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF A+ +  A              + T+  D+  P V  GLI G ++PY F  + M +VG A   +VEEVRRQF   PG+MEG  +PDY   V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G  +   T   KGS+ HKA+V GDT+GDP +
Sbjct:  428 ALDAFGPVTDNAGGIAEMSHLPPEVRKSTDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGDKHPYFADVGTISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAGSAVVEEVRRQFKEKPGIMEGKDRPDYGRAVDMLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFVDRNGTRHMKGSEAHKASVTGDTVGDPYK 685          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_RHIRD (Pyrophosphate-energized proton pump (Fragment) OS=Rhizobium radiobacter GN=hppA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 99/185 (53.51%), Postives = 123/185 (66.49%), Query Frame = 3
Query:   39 AGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIS------------TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAI 557
            AGGIAEMA +   +R+ TD LD+ GNTTAAI KGFAIGSAAL +LALF AF    A +             V++  P V IG+ +GA LP+   A TM++VG AA +M+EEVRRQF  IPG+MEGT +PDYA CV IST A+I+EM+ PG   +  PLIVG   G + L+G LAG   SGV +AI
Sbjct:    1 AGGIAEMAELGPEVRKTTDKLDSVGNTTAAIAKGFAIGSAALTALALFTAFAEEIAKNPKLTGLLVDGHLVVNLTEPGVIIGIFLGATLPFLVCAFTMEAVGKAAFEMIEEVRRQFREIPGIMEGTGRPDYAKCVDISTKAAIREMMLPGVFAVGAPLIVGFLLGAKALAGFLAGVTASGVLLAI 185          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_STRAW (Pyrophosphate-energized proton pump OS=Streptomyces avermitilis GN=hppA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.363e-45
Identity = 107/263 (40.68%), Postives = 151/263 (57.41%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAG--MSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIST-------------------VDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLRTHLDHHLHP 731
            A+D + P+SDNA GIAEM+G       +  TD LDA GNTT AI KG AI +A L + ALFG++  R AI+T                   +D+  P   +GLI GA + + FS + + +V  +A  +V EVRRQF   PG+M+ T +P+Y   V I T  +++E+  PG L +L P+ +G   GV  L   LAG++ +G  +A+  +N+GGAWDNAKK +E G        G KGS+ H A VIGDT+GDP +      ++P
Sbjct:  474 AMDTFGPVSDNAQGIAEMSGDVTGAGAQVLTD-LDAVGNTTKAITKGIAIATAVLAASALFGSY--RDAITTAANDVGEKVSGAGAPMNLMMDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFREHPGIMDYTEQPEYGRVVDICTKDALRELATPGLLAVLAPIAIGFTLGVGALGAYLAGAIGTGTLMAVFLANSGGAWDNAKKLVEDGHH------GGKGSEAHAATVIGDTVGDPFKDTAGPAINP 727          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_STRCO (Pyrophosphate-energized proton pump OS=Streptomyces coelicolor GN=hppA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.658e-44
Identity = 105/263 (39.92%), Postives = 151/263 (57.41%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMAGMSHRIRER--TDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIST-------------------VDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLRTHLDHHLHP 731
            A+D + P+SDNA GIAEM+G       +  TD LDA GNTT AI KG AI +A L + ALFG++  R AI+T                   +D+  P   +GLI GA + + FS + + +V  +A  +V EVRRQF   PG+M+ + KP+Y   V I T  +++E+  PG L ++ P+ +G   GV  L   LAG++ +G  +A+  +N+GG+WDNAKK +E G        G KGS+ H A VIGDT+GDP +      ++P
Sbjct:  467 AMDTFGPVSDNAQGIAEMSGDVEGAGAQVLTD-LDAVGNTTKAITKGIAIATAVLAAAALFGSY--RDAITTGAADVGEKLSGEGAPMTLMMDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFRERPGIMDYSEKPEYGKVVDICTRDALRELATPGLLAVMAPIFIGFTLGVGALGAFLAGAIGAGTLMAVFLANSGGSWDNAKKLVEDGHH------GGKGSEAHAATVIGDTVGDPFKDTAGPAINP 720          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_CHRVI (Pyrophosphate-energized proton pump (Fragment) OS=Chromatium vinosum GN=hppA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 95/197 (48.22%), Postives = 126/197 (63.96%), Query Frame = 3
Query:   39 AGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIS----TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF--------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNA 593
            AGGIAEM+G+   +R+ TDALDA GNTT A+ KG+AIGSA L +L LF  +     ++       +  P V IGL +G ++PY F AM M++VG AA  +V EVRRQF  I G+MEGTAKPDY+  V + T A+IKEM+ P  L +L P+ V I          G+  L G+L G++V+G+ +AIS    GGAWDNA
Sbjct:    1 AGGIAEMSGLPEDVRKTTDALDAVGNTTKAVTKGYAIGSAGLAALVLFADYTHNLEVAGKMQVFSLSDPAVIIGLFIGGLVPYLFGAMAMEAVGRAAGSVVIEVRRQFREIKGIMEGTAKPDYSRAVDLLTKAAIKEMVVPSLLPILVPVAVAIGMNILMGDGAGIRALGGMLIGTIVTGLFVAISMCTGGGAWDNA 197          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA1_MYCDI (Pyrophosphate-energized proton pump 1 (Fragment) OS=Mycoplana dimorpha GN=hppA1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 89/214 (41.59%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  144 AIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLR 704
            AIGSA L +L LF A+ +  +                    D+  P V  GLI G ++PY F  + M +VG AA  +VEEVRRQF   PG+M+G  KP+Y   V + T A+I+EMI P  L +L PL+V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G  +       KGS+ HKA+V GDT+GDP +
Sbjct:    1 AIGSAGLGALVLFAAYSNDLSYFAANGDKYPYFANIGEISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAAGSIVEEVRRQFKEKPGIMQGKDKPNYGRAVDLLTKAAIREMIVPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFVDKDGQRHMKGSEAHKASVTGDTVGDPYK 212          
BLAST of FC930816 vs. ExPASy Swiss-Prot
Match: HPPA_CHLTE (Pyrophosphate-energized proton pump OS=Chlorobium tepidum GN=hppA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 80/277 (28.88%), Postives = 127/277 (45.85%), Query Frame = 3
Query:    6 AIDAYAPISDNAGGIAEMA------GMSHRIRER-------------TDALDAAGNTTAAIGKGFAIGSAALVS--------LALFGAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLS--------GVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLRTHLDHHLHP 731
            A+D+Y P++DNA  + E++       +S+ I                 +A D AGNT  A  K   IG+A + S        + L G      AI+ + +L P   +GL++G  + YWF+  +M +V + A   V  +++    + G+ + + + D    V+I T  + K MI          L + IFF     +        G L    + G+  AI  +N GGAWDNAKK +E         L  KG++ H A+V+GDT+GDP +      L+P
Sbjct:  439 AVDSYGPVTDNAQSVYELSLIETLPNISNSIESEFGFKPDFENAKRYLEANDGAGNTFKATAKPVLIGTAVVGSTTMIFSIIMILTGGLADTGAIAKLSILWPPFLLGLLMGGAVIYWFTGASMNAVTTGAYYAVAFIKKNIK-LDGVTKASTE-DSKKVVEICTRFAQKGMI---------NLFLTIFFSTLAFACLESYLFIGYLISIALFGLYQAIFMANAGGAWDNAKKVVET-------ELHAKGTELHDASVVGDTVGDPFKDTSSVALNP 697          
The following BLAST results are available for this feature:
BLAST of FC930816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA_BRUME6.715e-5445.00Pyrophosphate-energized proton pump OS=Brucella me... [more]
HPPA_OCHA48.771e-5445.38Pyrophosphate-energized proton pump OS=Ochrobactru... [more]
HPPA_PYRAE1.145e-5342.64Pyrophosphate-energized proton pump OS=Pyrobaculum... [more]
HPPA_RHIME1.496e-5345.38Pyrophosphate-energized proton pump OS=Rhizobium m... [more]
HPPA_RHIRD6.731e-4653.51Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_STRAW4.363e-4540.68Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA_STRCO1.658e-4439.92Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA_CHRVI4.824e-4448.22Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA1_MYCDI9.118e-3541.59Pyrophosphate-energized proton pump 1 (Fragment) O... [more]
HPPA_CHLTE3.364e-2128.88Pyrophosphate-energized proton pump OS=Chlorobium ... [more]

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Properties
Property NameValue
Genbank descriptionC34109D01EF PostHarvP1 Citrus clementina cDNA clone C34109D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930816 ID=FC930816; Name=FC930816; organism=Citrus clementina; type=EST; length=739bp
GATAGGCTATTGATGCATATGCTCCCATCAGTGACAATGCTGGAGGCATT
GCTGAGATGGCAGGCATGAGCCACAGAATCAGAGAGAGAACTGATGCTCT
TGATGCTGCAGGAAACACCACTGCAGCTATTGGAAAGGGTTTCGCCATTG
GTTCTGCAGCTCTTGTGTCGCTAGCCCTCTTTGGTGCCTTTGTGAGCCGT
GCAGCTATTTCAACTGTTGATGTGTTGACTCCAAAAGTGTTTATTGGTTT
GATTGTTGGTGCTATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGA
GTGTGGGAAGTGCAGCTCTTAAAATGGTTGAGGAAGTGCGCAGGCAATTT
AACACCATCCCTGGTCTTATGGAAGGCACTGCCAAACCTGATTATGCTAC
CTGTGTTAAGATCTCCACCGATGCATCCATCAAAGAGATGATCCCACCTG
GTGCCCTTGTCATGCTTACACCCCTTATTGTTGGTATCTTTTTTGGTGTG
GAAACTCTCTCTGGGGTCCTTGCCGGTTCCCTTGTCTCAGGTGTACAGAT
TGCTATCTCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGT
ACATTGAGGCTGGCGCTTCAGAGCACGCCAGAACTCTTGGTCCAAAAGGA
TCAGATCCACACAAGGCTGCGGTCATTGGTGACACAATTGGGGATCCATT
AAGGACACATCTGGACCATCACTTACATCCTAATCAGCT
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