FC930818

Overview
NameFC930818
Unique NameFC930818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15373 contig Ccv1_Contig15373:85..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.011e-74
Identity = 131/198 (66.16%), Postives = 162/198 (81.82%), Query Frame = 2
Query:   80 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK-DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +FQKI V NP+VEMDGDEMTRV WK I++KL+ P++++ + Y+DLG+  RD T+D++TV++A+A LK +V IKCATITPDEARVKE+ LK+MWKSPNGTIRNILNGTVFREPI+ KN+P+ IPGWT PICIGRHAFGDQY++TD V  GPGKL+L F P+G    K    VY F G  GVA+SMYNTD+SIR FA +S
Sbjct:   10 SFQKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNG-SGVAMSMYNTDDSIRGFAHSS 206          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.011e-74
Identity = 134/194 (69.07%), Postives = 161/194 (82.99%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            KIKV NP+VE+DGDEMTR+ W+ I++KLI P+L++D+KY+DLGL  RD TDD+VTVE+AEA  KY V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GTVFREPII   +PRL+PGW KPI IGRHAFGDQYRATD VI GPGKL+LV+ P   + +T ++VY+F G GG+A + YNTDESIR FA AS
Sbjct:   92 KIKVKNPVVELDGDEMTRIIWQEIREKLILPYLDVDLKYYDLGLEYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKMWLSPNGTIRNILGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLELVYTPVNGEPET-VKVYDFQG-GGIAQTQYNTDESIRGFAHAS 283          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 132/195 (67.69%), Postives = 154/195 (78.97%), Query Frame = 2
Query:   86 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            QKI V NPIVEMDGDEMTR+ W+ IKDKLI P+L +D+KY+DLG+  RD TDDKVT ++AEA L+Y V +KCATITPDEARVKEF LK+MW SPNGT+RN++ GTVFREPI+  N+PR++P W KPI IGRHAFGDQY+ATD VI   G LKLVF P+   E  E  VY F G  GVALSMYNTD SI  FAE+S
Sbjct:    5 QKITVKNPIVEMDGDEMTRIIWQFIKDKLILPYLNVDLKYYDLGIEYRDKTDDKVTTDAAEAILQYGVGVKCATITPDEARVKEFNLKKMWLSPNGTLRNVIGGTVFREPIVIDNIPRIVPSWEKPIIIGRHAFGDQYKATDVVIPAAGDLKLVFKPKDGGEVQEFPVYQFDGP-GVALSMYNTDASITDFAESS 198          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.008e-72
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            KIKV NPIVE+DGDEMTR+ W+ IKD+LI P+L++D+KY+DLG+ +RDATDD++T+++A A  +Y V +KCATITPDEARVKEF LK+MW SPNGTIRNIL GTVFRE II   +PRLIPGW KPI IGRHAFGDQY+ATD VI  PG+L+L F P    E    +VY++TG  GV L+MYNTDESI  FA AS
Sbjct:   29 KIKVKNPIVELDGDEMTRIIWQKIKDQLILPYLDVDLKYYDLGIESRDATDDQITIDAANAIKEYGVGVKCATITPDEARVKEFHLKKMWLSPNGTIRNILGGTVFRESIIIPCIPRLIPGWEKPIVIGRHAFGDQYKATDLVINEPGRLELRFTPASGGEAQTQKVYDYTGP-GVGLAMYNTDESITGFAHAS 221          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 127/194 (65.46%), Postives = 157/194 (80.93%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            KIKV +PIVEMDGDE TRV WK IK+KLI P+L++D+KY+DL +  RD T+D+VT +S+ ATLKY VA+KCATITPDEAR+KEF LK+MWKSPNGTIRNIL GTVFREPII   +PRL+P W KPI IGRHAFGDQYRATD  I+  GKL+L F  +   E  +L+VY F   GG+A++M+NT++SI+ FA+AS
Sbjct:    3 KIKVVHPIVEMDGDEQTRVIWKLIKEKLILPYLDVDLKYYDLSIQERDRTNDQVTKDSSYATLKYGVAVKCATITPDEARMKEFNLKEMWKSPNGTIRNILGGTVFREPIIIPKIPRLVPHWEKPIIIGRHAFGDQYRATDIKIKKAGKLRLQFSSDDGKENIDLKVYEFPKSGGIAMAMFNTNDSIKGFAKAS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.330e-71
Identity = 127/195 (65.13%), Postives = 155/195 (79.49%), Query Frame = 2
Query:   86 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            QKI+    +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ MYN D+SI  FA +S
Sbjct:    3 QKIQ-GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAMGMYNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.779e-71
Identity = 124/194 (63.92%), Postives = 156/194 (80.41%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            KIKVANPIVEMDGDE TR+ W  I+DKL+ P+L++D+KY+DL +  RD T+D+VTV+SA ATLKY VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPII   +PRL+P W KPI IGRHAFGDQY+ATD ++   G+L+LV+  +      +L+V+++   GGVA+ MYNT +SI  FA+AS
Sbjct:    3 KIKVANPIVEMDGDEQTRIIWHLIRDKLVLPYLDVDLKYYDLSVEYRDQTNDQVTVDSATATLKYGVAVKCATITPDEARVEEFHLKKMWKSPNGTIRNILGGTVFREPIIIPRIPRLVPQWEKPIIIGRHAFGDQYKATDVIVPEEGELRLVYKSKSGTHDVDLKVFDYPEHGGVAMMMYNTTDSIEGFAKAS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.510e-70
Identity = 128/204 (62.75%), Postives = 157/204 (76.96%), Query Frame = 2
Query:   65 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD--EKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            T +  AF KIKV  P+VE+DGDEMTR+ W  IK KLI P+L++D+KY+DL + +RDAT DK+T ++AEA  KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+   +PRL+P W KPI IGRHA GDQY+ATDT+I GPG L+LV+ P      +   L+VY++ G  GVA++MYNTDESI  FA +S
Sbjct:   11 TSRLAAFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSS 213          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.576e-70
Identity = 123/194 (63.40%), Postives = 157/194 (80.93%), Query Frame = 2
Query:   86 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            ++IKV  P+VEMDGDE TR+ W+SIK KLIFP++++  +Y+DLGLPNRDAT+D+VT+++A A  +  + +KCATITPDEARVKEF LK+MWKSPNGTIRNIL+GTVFR PIICKN+P L+PGW KPI IGRHA GDQY+ATD V+ GPGKL+++F P  + E  +  +Y+F G  GVA+ MYNT  SI AFA +
Sbjct:   25 KRIKVTGPVVEMDGDEQTRIMWESIKSKLIFPYVDITPEYYDLGLPNRDATNDQVTIDAANAIKRAKIGVKCATITPDEARVKEFGLKEMWKSPNGTIRNILDGTVFRGPIICKNLPLLVPGWKKPIIIGRHAHGDQYKATDFVVNGPGKLEMIFTP-SQGEPIKKVIYDFKG-SGVAMGMYNTTSSITAFAHS 216          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 122/187 (65.24%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSS 196          
The following BLAST results are available for this feature:
BLAST of FC930818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_SCHPO1.011e-7466.16Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHP_ASPNG1.011e-7469.07Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH2_CANTR3.251e-7367.69Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDH1_CANTR8.008e-7266.49Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHH_YEAST1.366e-7165.46Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDHC_BOVIN2.330e-7165.13Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDHC_YEAST6.779e-7163.92Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDHP_YEAST1.510e-7062.75Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_DICDI2.576e-7063.40Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_PONAB3.364e-7065.24Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionC34109D03EF PostHarvP1 Citrus clementina cDNA clone C34109D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930818 ID=FC930818; Name=FC930818; organism=Citrus clementina; type=EST; length=676bp
AACGACCTCGGCACCTCCGCTCTGCCCTATTATCTCTCTCTAGTTGTGAA
TCAACCGAAACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTC
GCCAATCCCATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTG
GAAATCGATTAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAA
AGTACTTCGACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTT
ACCGTTGAAAGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTG
TGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTTGAAAC
AGATGTGGAAGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACT
GTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGG
CTGGACAAAGCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATC
GAGCAACTGATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTT
GTACCAGAGGGAAAAGATGAGAAGACAGAGTTGGAGGTTTACAACTTTAC
GGGTGAGGGTGGAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCC
GAGCTTTTGCTGAGGCTTCTATGACA
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