FC930818

Overview
NameFC930818
Unique NameFC930818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15373 contig Ccv1_Contig15373:85..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 121/187 (64.71%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLIFP+++LD+  +DL + NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ M+N D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVDLDLHSYDLSIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEICYTPSDGSPKTVYLVHNFTESGGVAMGMFNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.278e-69
Identity = 121/187 (64.71%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  K+NV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.670e-69
Identity = 121/187 (64.71%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ F P+   +K    V++F   GGVA+ MYN D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITFTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.720e-69
Identity = 120/187 (64.17%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHDFEEGGGVAMGMYNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.720e-69
Identity = 120/187 (64.17%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.720e-69
Identity = 120/187 (64.17%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  110 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSS 196          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMT 676
            KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L MYN  ESIR FA AS +
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFS 201          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMT 676
            KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L MYN  ESIR FA AS +
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFS 201          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.728e-66
Identity = 119/194 (61.34%), Postives = 152/194 (78.35%), Query Frame = 2
Query:   89 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEAS 670
            KIKV NP+VE+DGDEMTR+ W+ I+++LI P+L++D+KY+DL +  RD T D++T+++A A  +Y V +KCATITPDEARV+EF LK+MWKSPNGTIRNIL G VFREPI+ KNVPRL+PGWT PI +GRHAFGDQY+ATD  + G G L + +V     E+ E EV+ F    GVA+ MYN DESIR FA+AS
Sbjct:    3 KIKVKNPVVEIDGDEMTRIIWEWIRERLILPYLDVDLKYYDLSVEKRDETSDQITIDAANAIKEYGVGVKCATITPDEARVEEFGLKKMWKSPNGTIRNILGGVVFREPIVIKNVPRLVPGWTDPIVVGRHAFGDQYKATDFKVPGAGTLTMKWVGT-NGEELEYEVFEFP-SAGVAMGMYNLDESIRDFAKAS 194          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.259e-65
Identity = 117/194 (60.31%), Postives = 147/194 (75.77%), Query Frame = 2
Query:   86 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            +KI V+NP+  + GDE TRV W  I+ KLIFPFL+L ++ +DLG+  RD T+D+VT+++A A  +  V IKCATITPDEARV EF LK+MWKSPNGTIRN L GT+FREPI+CKNVPRL+  W K I IGRHAFGDQYRATD V++G GKL+L + P       + +V++F  +GGVAL MYNTD SI+ FA A
Sbjct:    3 EKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGTLFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVFDFPSDGGVALGMYNTDASIKEFAYA 196          
The following BLAST results are available for this feature:
BLAST of FC930818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_SHEEP9.789e-7064.71Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_HUMAN1.278e-6964.71Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_MICME1.670e-6964.71Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT3.720e-6964.17Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE3.720e-6964.17Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH3.720e-6964.17Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDH_MYCTU1.563e-6761.73Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO1.563e-6761.73Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDH_SPHYA1.728e-6661.34Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHC_DICDI3.259e-6560.31Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionC34109D03EF PostHarvP1 Citrus clementina cDNA clone C34109D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930818 ID=FC930818; Name=FC930818; organism=Citrus clementina; type=EST; length=676bp
AACGACCTCGGCACCTCCGCTCTGCCCTATTATCTCTCTCTAGTTGTGAA
TCAACCGAAACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTC
GCCAATCCCATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTG
GAAATCGATTAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAA
AGTACTTCGACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTT
ACCGTTGAAAGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTG
TGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTTGAAAC
AGATGTGGAAGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACT
GTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGG
CTGGACAAAGCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATC
GAGCAACTGATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTT
GTACCAGAGGGAAAAGATGAGAAGACAGAGTTGGAGGTTTACAACTTTAC
GGGTGAGGGTGGAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCC
GAGCTTTTGCTGAGGCTTCTATGACA
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