FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 68/187 (36.36%), Postives = 100/187 (53.48%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKS----DLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE-FLKTDGIANAALYLASDESSYVSGQNLVVDGGFSV 555
            L+DTA+  FG LD+M NN+G     F  +   P      D +R+I+VN  G FLGAK A   ++    KG +L  +S   +I    +  Y+ SK GI  + + LA      GIRVN ++P  +AT    +  VD    ES   Q+  +  + F K + +A AA +L S+E+SYV+G  L VDGG ++
Sbjct:   75 LLDTALEHFGTLDVMVNNSG-----FNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIAT----ESNVDTKKEESRQKQLKKIPMKAFGKPEEVAAAAAWLVSEEASYVTGATLFVDGGMTL 252          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMG-NLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            VDT +++  +LD + NNAGIL  +   + DT   + +R+  +N    FLG +     +    KGCI+  +S    +   G+ AY  SK  +    K  A +L  + IRVN V P  +AT M+ +    P   +S+ + +G  L G   +   ++ A L+L SDE+S+V G  LVVDGG++
Sbjct:   74 VDTILAESDRLDALVNNAGIL--TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAP---QSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMG-NLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            VDT +++  +LD + NNAGIL  +   + DT   + +R+  +N    FLG +     +    KGCI+  +S    +   G+ AY  SK  +    K  A +L  + IRVN V P  +AT M+ +    P   +S+ + +G  L G   +   ++ A L+L SDE+S+V G  LVVDGG++
Sbjct:   74 VDTILAESDRLDALVNNAGIL--TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAP---QSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 58/184 (31.52%), Postives = 105/184 (57.07%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGL-GSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVVNP 564
            ++  + + G++D++ NNAG + ++    LD    +  ++  V+  G FL ++ AAR +V Q +G  +   ++  E   L  + AYT +K+ + GL K +A EL ++ I VN V+P  +AT M+   G+D + ++        L+  F  T  IA+  ++L S+ ++Y +GQ+L+VDGGF + NP
Sbjct:   71 LEKLIQRLGRIDVLVNNAGAMTKA--PFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMN---GMDDSDVKPDAEPSIPLR-RFGATHEIASLVVWLCSEGANYTTGQSLIVDGGFMLANP 248          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 70/188 (37.23%), Postives = 103/188 (54.79%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +VINLV +A+ +FGKLD+M NNAG+   +  S  +   SD  ++I+ N  G FLG++ A +  V    KG ++  +S   +I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG + GE    + IA  A +LAS E+SYV+G  L  DGG +
Sbjct:   71 DVINLVQSAIKEFGKLDVMINNAGL--ENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVE-SMIPMGYI-GE---PEEIAAVAAWLASSEASYVTGITLFADGGMT 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +VINLV +++ +FGKLD+M NNAG+   +  S  +   SD  ++I+ N  G FLG++ A +  V    KG ++  +S   +I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG + GE    + IA  A +LAS E+SYV+G  L  DGG +
Sbjct:   71 DVINLVQSSIKEFGKLDVMINNAGM--ENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVE-SMIPMGYI-GE---PEEIAAVAAWLASSEASYVTGITLFADGGMT 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: BDH2_MOUSE (3-hydroxybutyrate dehydrogenase type 2 OS=Mus musculus GN=Bdh2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 59/193 (30.57%), Postives = 99/193 (51.30%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPA-YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK------------GEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSV 555
            +D   S+  ++D+++N AG +    G+ILD  + D +  +N+N    FL  K     ++ Q+ G I+  +S  + I G+ +   Y+ +K  ++GL K +AA+  Q GIR NCV P          G VD   ++  +    N K            G F   + +A   +YLASDES+YV+G  +++DGG+S+
Sbjct:   65 IDQFASEIERIDVLFNVAGFVHH--GTILDCEEKDWDFSMNLNVRSMFLMIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCP----------GTVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAYVTGNPVIIDGGWSL 245          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 55/183 (30.05%), Postives = 97/183 (53.01%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESS-YVSGQNLVVDGG 546
            EV  L+ T + KF ++D++ NNAGI   +   +L     D + +I++N  G FL  K  +++++ Q+ G I+   S    +   G   Y+ +K G++G  K +A EL   G+ VN V+P  +AT M+     +P L    +++ G       + + +A    +LA+D ++ Y++GQ   VDGG
Sbjct:   70 EVDQLIKTTLDKFSRIDVLVNNAGITRDTL--LLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAEPILQFIPLARYG-------QPEEVAGTIRFLATDPAAAYITGQTFNVDGG 243          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 56/182 (30.77%), Postives = 97/182 (53.30%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDT-PKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            +   + +FG +D++ NNAGI   S   +L T P    ++++ VN  G FLG +     ++ Q  G I+  AS  + +A  G  AYT SK  +L L K +A +    GIR N V P  + T M+      P L +  ++++   + E      +A+A ++LA ++++YV+G  LV+DG ++ +
Sbjct:   71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP--QKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTAI 250          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP-----YGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            +V   V  FG+LDI+ NNAGI+   +G+I +T + D ++ + VN  G FL +K+A   +  Q  G I+  +S    I       Y++SK  +LGL + LA +   YGIRVN V P      GL     +K   +P  +   M+    +K    K + IA A L+ A DE+ +++G  + +DGG + V
Sbjct:   70 IVKKTVETFGRLDILVNNAGIVP--YGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQSEGLMA--RVKASPNPEELLKKMTSRIPMK-RLGKEEEIAFAILFAACDEAGFMTGSIINIDGGSTAV 251          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
DHG2_BACSU5.968e-1936.36Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
CPNA_COMTE1.330e-1833.33Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS91.330e-1833.33Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
YOHF_ECOLI1.736e-1831.52Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
DHG_BACME2.962e-1837.23Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
DHG1_BACME8.618e-1836.70Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
BDH2_MOUSE8.618e-1830.573-hydroxybutyrate dehydrogenase type 2 OS=Mus musc... [more]
FABG1_SYNY31.470e-1730.053-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
HCDR_XANP21.920e-1730.772-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
Y325_THEMA2.508e-1733.69Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
back to top