FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHB8_CALJA (Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Callithrix jacchus GN=HSD17B8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 44/136 (32.35%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  118 DLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSG 522
            D +++I VN  G FL  + A + +V     G I+  +S   ++  +G   Y  SK G++GL +  A ELG++GIR N V P  +AT M+ K         + M  MG+L       + +A+   +LAS++S Y++G
Sbjct:    1 DWDKVIAVNLKGTFLVTQAAGQALVSSGCSGSIINISSIVGKVGNMGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVMNKITGMIPMGHLG----DPEDVADVVAFLASEDSGYITG 132          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 50/178 (28.09%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   19 DTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGF 549
            + A+S  G +D++ NNA +   +    L+  K   +   NVN       ++  AR ++ +   G I+  +S  ++ A      Y  +K  +  L K +A ELG + IRVN V+P  + T M      DP   +  + ++    G+F + + + +  L+L S+ SS  +G  L VDGGF
Sbjct:   68 EQALSNVGPVDLLVNNAAVA--TLQPFLEVTKEACDTSFNVNFRAVVQVSQIVARGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPMGRANWSDPHKAKVMLDRIP--LGKFAEVENVVDTILFLLSNRSSMTTGSALPVDGGF 241          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: BPHB_PSEPU (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas putida GN=bphB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 58/189 (30.69%), Postives = 96/189 (50.79%), Query Frame = 1
Query:   28 VSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLAT---GMSMKGGVDPALIESSMSQMGNLK-----GEFLKTDGIANAALYLAS-DESSYVSGQNLVVDGGFSV 555
            V+KFGK+D +  NAGI D S  +++D P+  L+     + ++N + G++ A  A    +   +G ++FT S        G P YT +K+ ++GLV+ LA EL  Y +RVN V P G+ +   G S  G    A+    ++ M  LK     G   + +    A ++ A+  +++  +G  L  DGG  V
Sbjct:   74 VAKFGKIDTLIPNAGIWDYST-ALIDLPEESLDAAFDEVFHIN-VKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAVVGLVRELAFELAPY-VRVNGVGPGGINSDLRGPSSLGMGGKAISTVPLADM--LKSVLPIGRMPEAEEYTGAYVFFATRGDAAPATGALLNYDGGLGV 257          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
DHB8_CALJA7.813e-1132.35Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Ca... [more]
DCXR_RAT7.813e-1128.09L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
BPHB_PSEPU7.813e-1130.69Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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