FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 60/181 (33.15%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM--SMKGGV-DPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            L+ TAV +FG LD+M NNAGI   +  ++    +   +++I V+  G + G + AA ++  +++G I+  +S   ++  +G   Y+ +K GI+G+ K  A EL   GIRVN ++P  + + M  +M   + D  L E  M + G       +   +A+ A++LASD SSY++G  L V GG
Sbjct:   73 LIRTAVERFGGLDVMVNNAGITRDA--TMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAG-------EPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 60/181 (33.15%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM--SMKGGV-DPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            L+ TAV +FG LD+M NNAGI   +  ++    +   +++I V+  G + G + AA ++  +++G I+  +S   ++  +G   Y+ +K GI+G+ K  A EL   GIRVN ++P  + + M  +M   + D  L E  M + G       +   +A+ A++LASD SSY++G  L V GG
Sbjct:   73 LIRTAVERFGGLDVMVNNAGITRDA--TMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAG-------EPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            +V  L DTA   FG L I+ NNAG+ D  + ++  T   + +R+  VN  G FL ++ AA+ VV    G I+  +S+   +      AYT SK  +  + + LA EL    I  NCV+P  +AT M   G  + A+     S      G   K + +A    +LASDE  +V+ Q + V+GG
Sbjct:   91 QVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFAGKSEAAVEAGVKSNPFERLG---KVEDVAPLVAFLASDEGEWVNAQVVRVNGG 269          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: BDH2_HUMAN (3-hydroxybutyrate dehydrogenase type 2 OS=Homo sapiens GN=BDH2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 57/193 (29.53%), Postives = 100/193 (51.81%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPA-YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK------------GEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSV 555
            +D   ++  +LD+++N AG +    G++LD  + D +  +N+N    +L  K     ++ Q+ G I+  +S  + + G+ +   Y+ +K  ++GL K +AA+  Q GIR NCV P          G VD   ++  +   GN +            G F   + IA   +YLASDES+YV+G  +++DGG+S+
Sbjct:   65 IDQFANEVERLDVLFNVAGFVHH--GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCP----------GTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGWSL 245          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 59/186 (31.72%), Postives = 102/186 (54.84%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 555
            +V  ++ TAV  +G +DI+ NNAGI     G ++   KS  + +I++N  G FL  + AA++++ ++KG I+  AS    +   G   Y+ +K G++G  K +A E     I VN V+P  +++ M+ K G D   I   + +   L G + + + +A    +LA +  SSYV+GQ   +DGG ++
Sbjct:  141 DVEAMIKTAVDAWGTVDILVNNAGI--TRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNAGQANYSAAKAGVIGFTKTVAREYASRNINVNAVAPGFISSDMTSKLGDD---INKKILETIPL-GRYGQPEEVAGLVEFLAINPASSYVTGQVFTIDGGMTM 320          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HSD_STREX (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces exfoliatus PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.586e-17
Identity = 71/199 (35.68%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSD-LERLINVNTIGGFLGAKHAARVVVPQQK---GCILFTASACTEIAGLG-SPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGV---DPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVVNPTVMRAYG 585
            +V  A  +FG +D + NNAGI   S G  L+T   +   +++++N  G F+G K     V+P  K   G  +   S+   + GL  + +Y  SK+G+ GL K  A ELG   IRVN V P    T M+ + G+   +     + M ++GN  GE      IA A + L SD SSYV+G  L VDGG++   PTV    G
Sbjct:   70 VVAYAREEFGSVDGLVNNAGI---STGMFLETESVERFRKVVDINLTGVFIGMK----TVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGE------IAGAVVKLLSDTSSYVTGAELAVDGGWT-TGPTVKYVMG 254          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.586e-17
Identity = 71/188 (37.77%), Postives = 100/188 (53.19%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +V N+V TA+ +FG LDIM NNAG L+    S  + P  D +++I  N  G FLG++ A +  V    KG ++  +S    I       Y  SK GI  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG + GE    + IA  A +LAS E+SYV+G  L  DGG +
Sbjct:   71 DVKNIVQTAIKEFGTLDIMINNAG-LENPVPS-HEMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVE-SMIPMGYI-GE---PEEIAAVAAWLASKEASYVTGITLFADGGMT 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.586e-17
Identity = 66/188 (35.11%), Postives = 100/188 (53.19%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +V+NLV+TAV +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG +     K + IA+ A +LAS ++SYV+G  L  DGG +
Sbjct:   71 DVVNLVETAVKEFGSLDVMINNAGVENPVPSHELSL--ENWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPINAEKFADPEQRADVE-SMIPMGYIG----KPEEIASVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 60/202 (29.70%), Postives = 97/202 (48.02%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKG------------------EFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +V + V+    ++G+LDI+ NNAGI  +    I + P    E+LI V     F+  KH   ++  QQ G I+  AS    +   G  AY  +K+G++GL K  A E   +GI VN + P          G VD  L+ + +S +   +                     L    IA+ A++LAS+++  V+GQ +V+DGG++
Sbjct:   66 QVADTVNVIQKQYGRLDILVNNAGI--QHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCP----------GYVDTQLVRNQLSDLSKTRNVPYDSVLEQVIFPLVPQKRLLSVKEIADYAVFLASEKAKGVTGQAVVLDGGYT 255          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 61/185 (32.97%), Postives = 94/185 (50.81%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSV 555
            E+ +      +  G +D + N+AGI  R    +L T   D+  L++VN +G     K A R ++ QQ G I+   S       +G   Y  SK G++G  K LA E+ +  IRVN V+P  + T M++       L E S+++M  L G F   + +A + L+L   ES Y++G  LVVDGG  +
Sbjct:   61 EIQDTFKEITNNLGNVDYLVNSAGI--RRDALLLRTRSEDIRSLLSVNLVGTIQTCKLALRSMIQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTL------GLEEDSLTKMVPL-GRFGDPEEVAQSVLFLL--ESPYITGHVLVVDGGLQL 234          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
Y1385_MYCBO2.508e-1733.15Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU2.508e-1733.15Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
SDR1_PICAB2.508e-1733.52Short-chain type dehydrogenase/reductase OS=Picea ... [more]
BDH2_HUMAN2.508e-1729.533-hydroxybutyrate dehydrogenase type 2 OS=Homo sap... [more]
FABG_CUPLA3.275e-1731.723-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
HSD_STREX5.586e-1735.683-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
DHG_BACSU5.586e-1737.77Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
DHG2_BACME5.586e-1735.11Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
YXJF_BACSU9.529e-1729.70Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
CBR4_XENTR9.529e-1732.97Carbonyl reductase family member 4 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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