FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQK----GCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            E+  L D A+SK GK+DI+ NNAG          D P +D  R   +N    F    H +++V P+ +    G IL   S   E   +   +Y  SK     LV+ +A +LG+  IRVN ++P  + T  ++K  + P  IE  M Q   ++    +   IANAAL+L S  +S+VSGQ L V GG
Sbjct:   74 ELSALADFAISKLGKVDILVNNAG---GGGPKPFDMPMADFRRAYELNVFSFF----HLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTD-ALKSVITPE-IEQKMLQHTPIR-RLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQK----GCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            E+  L D A+SK GK+DI+ NNAG          D P +D  R   +N    F    H +++V P+ +    G IL   S   E   +   +Y  SK     LV+ +A +LG+  IRVN ++P  + T  ++K  + P  IE  M Q   ++    +   IANAAL+L S  +S+VSGQ L V GG
Sbjct:   74 ELSALADFAISKLGKVDILVNNAG---GGGPKPFDMPMADFRRAYELNVFSFF----HLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTD-ALKSVITPE-IEQKMLQHTPIR-RLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_BUCBP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 54/185 (29.19%), Postives = 95/185 (51.35%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS---MKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            E+   +D     FG++DI+ NNAGI+      +++    D   ++NVN    F  +K   R ++  ++G I+   S    I   G   Y+ +K G++G  K LA EL   GI VN ++P  + TGM+    +  +   L +  M ++G +K        I+   L+L S++++Y++GQ + V+GG
Sbjct:   66 EITKTMDFVYKNFGRVDILINNAGIIRDKL--LINMKTQDWNSVLNVNLNSIFYMSKSVIRNMIKNKQGKIITIGSVIAHIGNCGQTNYSAAKLGLVGFHKSLALELAPKGITVNMIAPGLIKTGMTNNLSQKQLSKYLSKIPMKRLGTIK-------EISKITLFLISNDANYITGQVIHVNGG 241          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +V+NLV TA+ +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG +     K + +A  A +LAS ++SYV+G  L  DGG +
Sbjct:   71 DVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSL--DNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVE-SMIPMGYIG----KPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: BDH2_BOVIN (3-hydroxybutyrate dehydrogenase type 2 OS=Bos taurus GN=BDH2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 56/186 (30.11%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPA-YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATG-----MSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSV 555
            +D   +   +LD+++N AG +    G+ILD  ++D +  +N+N    +L  K     ++ Q+ G I+  +S  + I G+ +   Y+ +K  ++GL K +AA+  Q GIR NCV P  + T      +  +   + AL +    Q     G F   + +A   +YLASDES+Y++G  +++DGG+S+
Sbjct:   65 IDQFANDIERLDVLFNVAGFVHH--GTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQK---TGRFATAEEVALLCVYLASDESAYITGNPVIIDGGWSL 245          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 62/182 (34.07%), Postives = 94/182 (51.65%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTE-IAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM--SMKGGVDPALIESSMSQMGNLKGEFLKTDG--IANAALYLASDESSYVSGQNLVVDGG 546
            +  A  K G++DI+ NNAG+     GS LD    D +  I++N  G +   K     ++ ++ G I+  +S   + +A  G  AY ++K  I+GL K LA E  Q GIRVN + P  + T M  S+    +P   ES +++M          D   +   A +LASDESSY++G   V+DGG
Sbjct:   73 IKRAKEKEGRIDILVNNAGVC--RLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 54/180 (30.00%), Postives = 97/180 (53.89%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQ-QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGF 549
            L+D AV++FG +DI+ NNAG++ R     L+  + D + ++N+N    F  ++ AA+  + Q   G I+  AS  +   G+  P+YT SK G++G+ + +A E  ++ I VN ++P  +AT  + +   D       + ++    G +     +    ++LAS  S YV+G  + VDGG+
Sbjct:   75 LLDRAVAEFGHIDILVNNAGLIRRE--DALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIP--AGRWGLPSDLMGPIVFLASSASDYVNGYTIAVDGGW 250          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 60/183 (32.79%), Postives = 93/183 (50.82%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTE-IAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS-----MKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            +  A  K G++DI+ NNAG+     GS LD    D +  I++N  G +   K     ++ ++ G I+  +S   + +A  G  AY ++K  I+GL K LA E  Q GIRVN + P  + T M+          DP  + + M++   L+        +   A +LASDESSY++G   V+DGG
Sbjct:   73 IKRAKEKEGRIDILVNNAGVC--RLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLR-RLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 57/187 (30.48%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GEFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 555
            +V  ++ TAV  +G +D++ NNAGI   +   ++   KS  + +I++N  G FL  + A ++++ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D   +E  +  +G +  G + + + +A    +LA S  +SY++GQ   +DGG ++
Sbjct:  149 DVDAMMKTAVDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---MEKKI--LGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 328          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +V+NLV TA+ +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG +     K + +A  A +LAS ++SYV+G  L  DGG +
Sbjct:   71 DVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSL--DNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPEQRADVE-SMIPMGYIG----KPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
HDHA_ECOLI2.123e-1634.957-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO572.123e-1634.957-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
FABG_BUCBP2.123e-1629.193-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
DHG3_BACME2.123e-1634.04Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
BDH2_BOVIN2.123e-1630.113-hydroxybutyrate dehydrogenase type 2 OS=Bos taur... [more]
UCPA_ECOLI2.772e-1634.07Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]
KDUD_ECOLI2.772e-1630.002-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
UCPA_ECO573.621e-1632.79Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
FABG2_BRANA3.621e-1630.483-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
DHGA_BACME3.621e-1634.04Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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