FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   52 IMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            ++ + AGI    F  +L   + D +R+I VN  G FL  + AA+ +V    +G I+  +S   ++  +G   Y  SK G++GL +  A ELG++GIR N V P  +AT M+ K    P  ++  ++ M  L G     + +A+   +LAS++S Y++G ++ V GG
Sbjct:   98 VVVSCAGITRDEF--LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK---MPEKVKDKVTAMIPL-GHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 257          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: YF3H_SCHPO (Uncharacterized oxidoreductase C22A12.17c OS=Schizosaccharomyces pombe GN=SPAC22A12.17c PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 62/176 (35.23%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   37 FGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSP--AYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            F  +DI+  N GI      S +D    +    INVN +G F  A +A  +   Q  G ++ TAS    +  +     AY  SK G++ L+K LA E  ++  RVNCVSP G  T     G         +  +   L  E      IA+A LYLASD +SY SG NL+VDGG++ +
Sbjct:   96 FDTIDIVVPNNGICTGK--SAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAVEWRKFA-RVNCVSP-GYTTSDMTGGKFHKEWEPYTPFERNGLAKE------IASAYLYLASDAASYASGTNLIVDGGYTSI 261          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_RICCN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia conorii GN=fabG PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 56/191 (29.32%), Postives = 100/191 (52.36%), Query Frame = 1
Query:    1 EVINLVD-----TAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            EV NL D       +SK  KLDI+  NAGI   +    +     D +++I++N    F+  + A + ++  + G I+  +S        G   Y  SK G++G+ K L+ E+   GI VN V+P  + + M+ K  ++    E+ + ++    G +   + +A+A  +LASD++SY++GQ + V+GG  +V
Sbjct:   57 EVCNLADKEECRNLISKASKLDILVCNAGITSDTLA--IRMKDEDFDKVIDINLKANFILNREAIKKMIQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNTVAPGFIKSDMTDK--LNEKQREAIVQKIP--LGTYGMPEDVAHAVAFLASDQASYITGQTIHVNGGMLMV 241          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_SHISS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella sonnei (strain Ss046) GN=hcaB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAARYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_RICBR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia bellii (strain RML369-C) GN=fabG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 59/191 (30.89%), Postives = 99/191 (51.83%), Query Frame = 1
Query:    1 EVINLVDTA-----VSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            +V NL +T      V++  KLDI+  NAGI   +    +     D +++I++N    F+  + A + ++  + G I+   S        G   Y  SK G++G+ K LA E+   GI VN V+P  + + M+ K  ++    E+   ++   KG +   + IANA  +LAS +SSY++GQ L V+GG  +V
Sbjct:   57 KVCNLTNTEECSNLVAQIEKLDILVCNAGITKDTLA--IRMKNEDFDQVIDINLKANFILNREAIKKMMTNRYGRIINITSIVGVSGNPGQANYCASKAGLIGMTKSLAYEVATRGITVNAVAPGFIKSDMTDK--LNDEQKEAITRKIP--KGTYGMPEDIANAVAFLASKQSSYITGQTLHVNGGMLMV 241          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            LV TAV   G +DI+ +NA + +  FGS++D  +   ++ +++N     L  K     +  +  G ++  +S        G   Y +SK  +LGL K LA EL    IRVNC++P  + T  S    +D    E SM +   ++    + +  A    +L S+++SY++G+ +VV GG
Sbjct:   81 LVATAVKLHGGIDILVSNAAV-NPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEK-EESMKETLRIR-RLGEPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 56/182 (30.77%), Postives = 93/182 (51.10%), Query Frame = 1
Query:    4 VINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGF 549
            V+  V     K+G+LD+M NNAGI   +  S +   + + + ++++N  G F GA  A + +   +KG I+ TAS       L    Y  SK  ++GL   L  E+ +  IRV  V+P  + T M+   G  P ++E  +  +   +   L+ + IAN  L+LASD +S ++   + VDG +
Sbjct:   72 VMAAVGQVAQKYGRLDVMINNAGITSNNVFSRVS--EEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFGSLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMT--NGNPPEIMEGYLKALPMKR--MLEPEEIANVYLFLASDLASGITATTVSVDGAY 247          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_SHIFL (3-oxoacyl-[acyl-carrier-protein] reductase OS=Shigella flexneri GN=fabG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   31 SKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            ++FG++DI+ NNAGI   +   ++     +   +I  N    F  +K   R ++ ++ G I+   S    +   G   Y  +K G++G  K LA E+   GI VN V+P  + T M+     D      +    G L G       IANA  +LASDE++Y++G+ L V+GG  +V
Sbjct:   75 AEFGEVDILVNNAGITRDNL--LMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGG----AQEIANAVAFLASDEAAYITGETLHVNGGMYMV 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 54/183 (29.51%), Postives = 91/183 (49.73%), Query Frame = 1
Query:   10 NLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            ++++   ++FG++DI+ NNAGI   +   ++     +   +I  N    F  +K   R ++ ++ G I+   S    +   G   Y  +K G++G  K LA E+   GI VN V+P  + T M+     D      +    G L G       IA+A  +LASDE+SY++G+ L V+GG  +V
Sbjct:   68 SVLENIRAEFGEVDILVNNAGITRDNL--LMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGG----AQEIASAVAFLASDEASYITGETLHVNGGMYMV 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 54/183 (29.51%), Postives = 91/183 (49.73%), Query Frame = 1
Query:   10 NLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            ++++   ++FG++DI+ NNAGI   +   ++     +   +I  N    F  +K   R ++ ++ G I+   S    +   G   Y  +K G++G  K LA E+   GI VN V+P  + T M+     D      +    G L G       IA+A  +LASDE+SY++G+ L V+GG  +V
Sbjct:   68 SVLENIRAEFGEVDILVNNAGITRDNL--LMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGG----AQEIASAVAFLASDEASYITGETLHVNGGMYMV 244          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
DHB8_MOUSE1.165e-1432.53Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]
YF3H_SCHPO1.521e-1435.23Uncharacterized oxidoreductase C22A12.17c OS=Schiz... [more]
FABG_RICCN1.521e-1429.323-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
HCAB_SHISS1.987e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
FABG_RICBR1.987e-1430.893-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHRS4_PONAB1.987e-1429.78Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
BAIA2_EUBSP1.987e-1430.77Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
FABG_SHIFL2.595e-1430.683-oxoacyl-[acyl-carrier-protein] reductase OS=Shig... [more]
FABG_SALTY2.595e-1429.513-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI2.595e-1429.513-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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