FC930825

Overview
NameFC930825
Unique NameFC930825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1852..2536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  148 KDLISRGLAVEDPSAPHGLKLTIEDYPF---ANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIAT 552
            +DL    L   +     G+  T ED P+    +DGL +W+AI+ + ++ V+ YY D  +V  D+ELQ +  ++   G   +K   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R   AT
Sbjct:  441 QDLTYSSLCFPEAIKARGMDST-EDIPYYFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPAT 577          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 1
Query:   10 INGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFP 516
            +N  A + L+ + G I+  F+      + ++      + F    LP+ L +R   V+DP+A       + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G  K   + P+      L+E++T +++  S  HAAVNF Q +   Y P
Sbjct:  416 VNEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARN--VDDPAA-------LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   10 INGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFP 516
            IN  A + L+ + G I+  F+      + ++      + F    LP+ L +R   V+DP       L + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G  K   + P+      L+E++T +++  S  HAAVNF Q +   Y P
Sbjct:  416 INEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARN--VDDP-------LALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 64/231 (27.71%), Postives = 112/231 (48.48%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRT----VGHGDKKHEPWWPV-LKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            + I+ + R+ L+ + GI++ S S G            K+       LP  L  RG  V+DPS   G       + + +DGL LW+AI+ ++ + +  +Y +   V+ D E+Q+W  ++      V  G + H    P   ++ + L E++T++V+  S  HAAVNF Q  + G+ PN P   R       P  ++ +  L     ++L+T PS++ A K +A +  L+  S
Sbjct:  794 LAIDTIGRKELIGSGGIVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGV--PASFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAVLR-----HPPPKKKGEATL----QSILSTLPSKSQAAKAIATVYILTKFS 1004          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  148 KDLISRGLAVEDPSAPHGL--KLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            KDL    L   +     G+  K  I  Y + +DGL +W+AI+ +  + V+ YY    +VE D ELQ +  ++   G   +K   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R
Sbjct:  442 KDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 573          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 47/174 (27.01%), Postives = 85/174 (48.85%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRP 525
            + IN LAR+ L+    +++ S   G            +Q  +    LP+D+ +R +              +  Y + +DG+ +W AI+ +V++ V+ YYP  + V  D+ELQAW  EI + G   ++      +L T + L++ +T +++  S  HAAV+  Q+    + PN P
Sbjct:  411 LHINTLARELLIAPGKVVDKSTGLGIGGFSDLIKRNMEQLSYSVLCLPEDIRARDVG------------DLPGYYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLP 572          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 53/178 (29.78%), Postives = 76/178 (42.70%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            MEIN  +R  L++  GI +   S G             Q  +     P DL +RGL            L I    +A D L LW+   ++V   V+ +Y    +V  D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  + G+ PN P T R
Sbjct:  397 MEINTRSRTQLISDGGIFDQVVSTGGGGHVQLLTRAVAQLTYHSLCPPDDLANRGL------------LRIPSALYARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVGLCHAQDRGFPVSFQSRAQLCHFLTMCVFTCTAQHAAINQGQLDWYGWVPNAPCTMR 562          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 53/178 (29.78%), Postives = 78/178 (43.82%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            MEIN  AR  L++  GI + + S G             Q  +     P DL  RGL            L +    +A+D L LW+ I ++V   V+ +Y    +V+ D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  +  + PN P T R
Sbjct:  397 MEINTRARTQLISDGGIFDKAVSTGGGGHVQLLRRAAAQLTYCSLCPPDDLADRGL------------LGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAPCTMR 562          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX12E_MOUSE (Arachidonate 12-lipoxygenase, epidermal-type OS=Mus musculus GN=Alox12e PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 51/178 (28.65%), Postives = 78/178 (43.82%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            MEIN LAR  LV+  GI +   S G                +     P DL  RGL         G+K ++    +A D L LW+ I ++V   V  +Y   + V+ D ELQ W  E+  VG    +   +   L++  +L   +   ++  +G HA+ + GQ  +  + PN P T R
Sbjct:  397 MEINTLARNNLVSEWGIFDLVVSTGSGGHVDILQRATSCLTYRSFCPPDDLADRGLV--------GVKSSL----YAQDALRLWEIISRYVERMVELFYRSDTDVKEDPELQVWCREVTEVGLLGAQDRGFPLSLESRAELCRFVAMCIFTCTGQHASTHLGQLDWYAWIPNGPCTMR 562          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX15_RABIT (Arachidonate 15-lipoxygenase OS=Oryctolagus cuniculus GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 48/178 (26.97%), Postives = 75/178 (42.13%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +EIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   +  YY     V  D ELQ+W  EI  +G    + + +   L++       +T  ++  +G H++++ GQ  +  + PN P T R
Sbjct:  398 LEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMR 563          
The following BLAST results are available for this feature:
BLAST of FC930825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX5_MESAU5.417e-1533.33Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LOX_PSEAE9.240e-1532.54Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LOXA_PSEAE9.240e-1533.14Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
AOSL_PLEHO1.207e-1427.71Allene oxide synthase-lipoxygenase protein OS=Plex... [more]
LOX5_HUMAN1.576e-1433.33Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LX15B_RAT3.511e-1427.01Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOX12_MOUSE2.276e-1329.78Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LOX12_HUMAN6.622e-1329.78Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LX12E_MOUSE2.782e-1128.65Arachidonate 12-lipoxygenase, epidermal-type OS=Mu... [more]
LOX15_RABIT4.745e-1126.97Arachidonate 15-lipoxygenase OS=Oryctolagus cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC34109D10EF PostHarvP1 Citrus clementina cDNA clone C34109D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930825 ID=FC930825; Name=FC930825; organism=Citrus clementina; type=EST; length=685bp
GAAATGGAGATCAATGGGTTGGCTCGACAAGCTCTTGTTAATGCTGATGG
AATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCT
CTGTTGCCTATGACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAA
GACCTAATTAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGG
CTTGAAGCTAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATC
TCTGGGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTAC
CCTGATAAAAGCCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGAC
TGAAATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGC
CTGTCTTGAAAACCCCTAAGGATTTAATTGAAATCATCACAACTATTGTT
TGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACACTTA
CGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCA
CTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTTGAAAACCTGAA
AATGCACTTTTGAATACCTTCCCTTCCCAGAATTCAGCTACTAAAGTTAT
GGCTATTCTTTGATGTTTATCGACTCATTCTCCTG
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