FC930825

Overview
NameFC930825
Unique NameFC930825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1852..2536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX12_RABIT (Arachidonate 12-lipoxygenase, 12S-type OS=Oryctolagus cuniculus GN=ALOX12 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 48/178 (26.97%), Postives = 75/178 (42.13%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +EIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   +  YY     V  D ELQ+W  EI  +G    + + +   L++       +T  ++  +G H++++ GQ  +  + PN P T R
Sbjct:  398 LEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMR 563          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 49/178 (27.53%), Postives = 76/178 (42.70%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V+ +Y     V+ D ELQ W  EI  +G    +   +   L++   +   +T  ++  +G HA+V+ GQ  +  + PN P T R
Sbjct:  397 LEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQSRDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMR 562          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 55/182 (30.22%), Postives = 82/182 (45.05%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAW---WTEIRTVGHGDKKHEPWWPV-LKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            MEIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   V+ +Y     V+ D ELQAW   +TEI  +G  D+     +PV L++ + L   +T  ++  +G H++ + GQ  +  + PN P T R
Sbjct:  398 MEINVRARNGLVSDLGIFDQVVSTGGGGHVELLRRAAALLTYSSFCPPDDLADRGL------------LGVESSFYAQDALRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDR----GFPVSLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPNAPCTMR 563          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 49/178 (27.53%), Postives = 75/178 (42.13%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V+ +Y     V+ D ELQ W  EI  +G    +   +   L+    +   +T  ++  +G HA+V+ GQ  +  + PN P T R
Sbjct:  397 LEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQARDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMR 562          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 47/178 (26.40%), Postives = 75/178 (42.13%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            MEIN  AR  LV+  G+ +   S G                +     P DL  RGL            L ++   +A D L LW+ + ++V   V+ +Y     V  D ELQAW  +I  +G    +   +   L++   L   +T  ++  +G H++ + GQ  +  + PN P T R
Sbjct:  398 MEINIRARTGLVSDSGVFDQVVSTGGGGHVELLQRAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEILSRYVEGIVSLHYKTDESVRDDIELQAWCRDITEIGLLGAQDRGFPVTLQSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAPCTMR 563          
The following BLAST results are available for this feature:
BLAST of FC930825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX12_RABIT4.745e-1126.97Arachidonate 12-lipoxygenase, 12S-type OS=Oryctola... [more]
LOX15_PONAB6.198e-1127.53Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]
LOX12_PIG6.198e-1130.22Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LOX15_HUMAN8.094e-1127.53Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]
LOX12_BOVIN8.094e-1126.40Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109D10EF PostHarvP1 Citrus clementina cDNA clone C34109D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930825 ID=FC930825; Name=FC930825; organism=Citrus clementina; type=EST; length=685bp
GAAATGGAGATCAATGGGTTGGCTCGACAAGCTCTTGTTAATGCTGATGG
AATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCT
CTGTTGCCTATGACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAA
GACCTAATTAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGG
CTTGAAGCTAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATC
TCTGGGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTAC
CCTGATAAAAGCCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGAC
TGAAATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGC
CTGTCTTGAAAACCCCTAAGGATTTAATTGAAATCATCACAACTATTGTT
TGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACACTTA
CGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCA
CTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTTGAAAACCTGAA
AATGCACTTTTGAATACCTTCCCTTCCCAGAATTCAGCTACTAAAGTTAT
GGCTATTCTTTGATGTTTATCGACTCATTCTCCTG
back to top