FC930835

Overview
NameFC930835
Unique NameFC930835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEAE (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 63/154 (40.91%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKF 685
            +++++DLT  E QA +  ++  +  +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H  MK+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKY 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEAB (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 63/154 (40.91%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKF 685
            +++++DLT  E QA +  ++  +  +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H  MK+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKY 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEA8 (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 63/154 (40.91%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKF 685
            +++++DLT  E QA +  ++  +  +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H  MK+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKY 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSE14 (Anthranilate phosphoribosyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            +++++DLT  E +  + + +  +  EA I AFL+ +R K ET  EIVG    M + A+ VE   L   VDIVGTGGDGAN  N+ST ++ + AA G KVAK             D+LEA GV ++L P  V RC+D  GIGFM +  +H  MK
Sbjct:   10 VVNQLDLTTDEMRDVMREIMTGQCTEAQIGAFLMGMRMKSETIDEIVGAVSVMRELASSVELKTLDGVVDIVGTGGDGANIFNVSTASAFVIAAAGCKVAKHGNRAVSGKSGSADLLEAAGVYLNLTPVQVARCIDSVGIGFMFAQSHHTAMK 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_DESPS (Anthranilate phosphoribosyltransferase OS=Desulfotalea psychrophila GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGD---AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            +++  DL+E+E  AS++ +++ +A  A I++F+  LR KGE   EIVG  R M   AT ++ GLG     +DIVGTGGDGA+T N+ST  S + AA G  VAK             DVLEALGV + LDP  V R V E GIGF+ +   H  MK
Sbjct:   19 VVTGADLSESEMMASMEEVMSGQASPAQIASFITALRMKGEAVEEIVGAVRVMRDKATFIDCGLGPDDILMDIVGTGGDGADTFNVSTTTSFVVAAAGVAVAKHGNRAVSSRCGSADVLEALGVDLSLDPATVARSVQEIGIGFLFAPLLHAAMK 173          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_RHIEC (Anthranilate phosphoribosyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 65/151 (43.05%), Postives = 86/151 (56.95%), Query Frame = 2
Query:  239 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            SR  LT  EA+A+ D L++ +A  + I  FL+ LR +GE+  EIVG    M      VE   DA+DIVGTGGD + T NIST A+++ A  G  VAK             D L ALGV ID+ PE + RC+ EA +GFM +  +H  M+ V
Sbjct:   13 SREPLTRDEARAAFDILMSGQATPSQIGGFLMALRVRGESVDEIVGAVTTMRSKMLTVEAPADAIDIVGTGGDASGTYNISTLAALIVAGAGVPVAKHGNRALSSKSGAADNLSALGVNIDVGPEIISRCIAEASVGFMFAQLHHSAMRHV 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_RHIE6 (Anthranilate phosphoribosyltransferase OS=Rhizobium etli (strain CIAT 652) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 65/151 (43.05%), Postives = 86/151 (56.95%), Query Frame = 2
Query:  239 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            SR  LT  EA+A+ D L++ +A  + I  FL+ LR +GE+  EIVG    M      VE   DA+DIVGTGGD + T NIST A+++ A  G  VAK             D L ALGV ID+ PE + RC+ EA +GFM +  +H  M+ V
Sbjct:   13 SREPLTRDEARAAFDILMSGQATPSQIGGFLMALRVRGESVDEIVGAVTTMRSKMLTVEAPADAIDIVGTGGDASGTYNISTLAALIVAGAGVPVAKHGNRALSSKSGAADNLSALGVNIDVGPEIISRCIAEASVGFMFAQLHHSAMRHV 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEPK (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain KT2440) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            ++ ++DLT  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H  MK
Sbjct:   10 IVGQLDLTTEEMREVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELAEKVELQSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCPVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVARCIDSLGIGFMFAQSHHSAMK 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEP1 (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            ++ ++DLT  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H  MK
Sbjct:   10 IVGQLDLTTEEMREVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELAEKVELQSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCPVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVARCIDSLGIGFMFAQSHHSAMK 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PARL1 (Anthranilate phosphoribosyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  212 FNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            F  +I  L     L  AEA+A+ + +++ EA +A I AFL+ LR +GET  EI   A  M + A +V    +A+DIVGTGGDG  T NIST  +++ AA G  VAK             D L+ALGV +D+DP  +   +++AGIGFM +  +H  MK V
Sbjct:    4 FKTIIARLAEGRALDAAEARAAFEIVMSGEATQAQIGAFLMGLRVRGETVAEITAGATVMRERALRVTAPANAIDIVGTGGDGVGTWNISTATALVVAAAGVPVAKHGNRKASSLSGTADALQALGVNLDIDPATIAASIEKAGIGFMFAQAHHAAMKHV 163          
The following BLAST results are available for this feature:
BLAST of FC930835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_PSEAE5.874e-2540.91Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEAB5.874e-2540.91Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEA85.874e-2540.91Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSE145.874e-2542.48Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_DESPS5.874e-2544.52Anthranilate phosphoribosyltransferase OS=Desulfot... [more]
TRPD_RHIEC7.672e-2543.05Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_RHIE67.672e-2543.05Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_PSEPK7.672e-2541.83Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEP17.672e-2541.83Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PARL17.672e-2541.25Anthranilate phosphoribosyltransferase OS=Parvibac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109E09EF PostHarvP1 Citrus clementina cDNA clone C34109E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930835 ID=FC930835; Name=FC930835; organism=Citrus clementina; type=EST; length=693bp
GAACACAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCT
CTCCATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTT
CGAAACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATT
AACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTC
TAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGAT
TTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGC
TGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAG
AAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCT
ACGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGG
TGATGGTGCAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTG
CAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCT
GCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTT
GGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCA
TGATGTCGACAAAGTATCACCCCTGCATGAAGTTTGTCAGGCC
back to top