FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.496e-42
Identity = 88/183 (48.09%), Postives = 113/183 (61.75%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W  G+P  +EEI+V PPKA EVR+K+   ++CHTD  +  G  P   FP +LGHEG G+VES+G+ V  LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR + +G+ + H    ST +EY VV    V K+DPS  L     L CG S+G+GAA    KVE
Sbjct:    8 CKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIFATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAKVE 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.259e-42
Identity = 87/183 (47.54%), Postives = 115/183 (62.84%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W  G+P  +EEI+V PP+A EVR+K++  ++CHTD  +  G  P   FP +LGHEG G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR + +G+ + H    ST +EY VV    V K+DPS  L     L CG S+G+GAA    KVE
Sbjct:    8 CKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVE 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 82/180 (45.56%), Postives = 115/180 (63.89%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V WG  +P+ +EEI+V PPKA EVRVK+L   IC TD    KG  +  FP ++GHE VG+VES+G+ V  ++ GD VIP F+ +CREC  C +   NLC++   T  G++ DG++R + +G+ + H    ST TEY V+D + V KVD +     A  + CG+S+G+GAA K  KV
Sbjct:   10 CKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKGSMVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLCIRSDLTGCGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAKV 189          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 93/217 (42.86%), Postives = 124/217 (57.14%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            ++   + CKA V W  G+P  +EE+ V PP+  EVR+K+LY S+CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V EL  GD V+P F GEC++C +C SE +N+C L    T  G+M  DG SR SI G+ +YH    ST +EY VV    V K++P   L     LSCG S+G GA     K  K                 +GARI G
Sbjct:    4 TVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKG-QNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAG 219          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 90/210 (42.86%), Postives = 123/210 (58.57%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            CKA V W  G+P  +EE++V PP+A EVRVK+L+ S+CHTD+    +KG   P+FPR+ GHE  G++ES+G+ V ++  GD V+P F GEC+EC +C S  +N+C L    T  G+M  DG SR SI G+ +YH    ST +EY V+    V K++P   L     LSCGYS+G GA+    K  K                 +GARI G
Sbjct:   10 CKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKG-QTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAG 218          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 93/217 (42.86%), Postives = 124/217 (57.14%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            ++   + CKA V W  G+P  +EE+ V PP+  EVR+K+LY S+CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V EL  GD V+P F GEC++C +C SE +N+C L    T  G+M  DG SR SI G+ +YH    ST +EY VV    V K++P   L     LSCG S+G GA     K  K                 +GARI G
Sbjct:    4 TVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKG-QNPVFPRILGHEAAGIVESVGEGVTELGPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAG 219          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.261e-42
Identity = 89/217 (41.01%), Postives = 126/217 (58.06%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSK--GFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF------HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQGQLK 704
            CKA +    GEP  +EEIQV+PP+A EVR+K+L  S+CHTD+   K    PL  FPR+LGHE VG+VESIG++V   K+GD+V+P F  +C EC+ C S  +N C KY   +      +G+    S     RG+ ++H    S+ TEY VVD  ++VK+ P I + +A+ LSC  ++G GAAWK   VE+                 +G R++G  K
Sbjct:   14 CKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYLSNTRRYGMT---SRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAK 227          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 93/210 (44.29%), Postives = 121/210 (57.62%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            CKA V W  G+P  +EE+ V PP+  EVR+K+LY S+CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V EL  GD V+P F GEC++C +C SE +N+C L    T  G+M  DG SR SI G+ +YH    ST +EY VV    V K++P   L     LSCG S+G GA     K  K                 +GARI G
Sbjct:   11 CKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKG-QNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAG 219          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 92/217 (42.40%), Postives = 124/217 (57.14%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            ++   + CKA V W  G+P  +EE+ V PP+  EVR+K+LY S+CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V +L  GD V+P F GEC++C +C SE +N+C L    T  G+M  DG SR SI G  +YH    ST +EY VV    V K++P   L     LSCG S+G GA+    K  K                 +GARI G
Sbjct:    4 TVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKG-QNPVFPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMLNDGKSRFSINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAG 219          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 85/210 (40.48%), Postives = 123/210 (58.57%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            C+A V W  G+P  +EE++V PP+A EVR+K+LY ++CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V ++  GD V+P F GEC+EC +C SE +N+C  L+       ++ DG SR +I GQ ++H    ST +EY V+    + K++P   L     LSCG S+G GA     K  K                M+GAR+ G
Sbjct:   10 CRAAVTWEAGKPLSIEEVEVAPPQAMEVRIKILYTALCHTDVYFWEAKG-QTPVFPRILGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECAHCKSEESNMCDLLRINVDRGVMIGDGKSRFTISGQPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGISTGLGATLNVAKPAKGSTVAIFGLGAVGLAAMEGARLAG 218          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADHX_RABIT2.496e-4248.09Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADHX_RAT3.259e-4247.54Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADH7_MOUSE4.257e-4245.56Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH3_SOLTU4.257e-4242.86Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH1_MAIZE4.257e-4242.86Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
ADH1_SOLTU5.560e-4242.86Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADHL2_ARATH7.261e-4241.01Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH2_SOLTU9.484e-4244.29Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLLC9.484e-4242.40Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH2_MAIZE9.484e-4240.48Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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