FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 42/144 (29.17%), Postives = 73/144 (50.69%), Query Frame = 3
Query:  147 KATEVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +A +V +K+LY  +CH+D+ + K  +    +P V GHE  G+V  +G  V + KEGD V +   +  C+ECE C  ++ + C K  FT++      S     R Q  Y        ++++VV   +V++   ++ L   + L C
Sbjct:   29 EADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYN------SPYKGTRTQGGY--------SDFVVVHQRFVLQFPDNLPLDAGAPLLC 158          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH2_PICST (Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = 3
Query:   75 TCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKG-FPLPL-FPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            T KAV+    G P   ++I V  PK  E+ + + Y+ +CHTD+ + KG +PL    P V GHEG G+V ++G+ V   + GD   I    G C +CE C +   + C     +  G   DGS                    +Y   DA    ++    DL+L + + C
Sbjct:    6 TQKAVIFETNGGPLLYKDIPVPKPKPNELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVALGENVTGWEIGDYAGIKWINGSCLQCEYCVTAHESNCPDADLS--GYTHDGS------------------FQQYATADAIQAARIPKGTDLALIAPILC 154          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 53/176 (30.11%), Postives = 76/176 (43.18%), Query Frame = 3
Query:   99 GEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKG-FPLPL-FPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            G  E  K EE+ V  P   EV V + Y  +CHTD+ + +G +PLP   P + GHEG G+V  +G  V  LK GD V +      C  CE C      +C     +  G   DG                  T   Y + +A +   +  S+ L +A+ + C   + +  A KE KV
Sbjct:   16 GGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQLS--GYTVDG------------------TFQHYCIANATHATIIPESVPLEVAAPIMCAGITCY-RALKESKV 170          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MTDH1_STYHU6.629e-1129.17Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
ADH2_PICST6.629e-1129.59Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2... [more]
ADH_SCHPO8.658e-1130.11Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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