FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 76/190 (40.00%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH--GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            ++   + CKA V W   +P+ +EE++V PPKA EVR+K++   IC +D     G     FP +LGHE  G++ES+G++V  LK GD VIP F+ +C EC +C S   NLC+K   +    GLM DG++R + +G+ ++H    ST TEY VV      K+D +  L     + CG+S+G+GA  +  KVE
Sbjct:    3 TVGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMPFPIILGHEAAGVIESVGEKVTSLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVE 192          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 78/182 (42.86%), Postives = 112/182 (61.54%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTD--ILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA + W  G P+ +EE++V PPKA EVR+K++   +C T+  +L SK   L L+P +LGHEG G+VESIG+ V  +K GD VI  F+ +C EC +C +   N C+++  +   LM DG+SR + +G+ +YH    ST  EY V+    V K+D    L     +SCG+S+GFGAA    KV
Sbjct:   10 CKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDL-LYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 78/182 (42.86%), Postives = 112/182 (61.54%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTD--ILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA + W  G P+ +EE++V PPKA EVR+K++   +C T+  +L SK   L L+P +LGHEG G+VESIG+ V  +K GD VI  F+ +C EC +C +   N C+++  +   LM DG+SR + +G+ +YH    ST  EY V+    V K+D    L     +SCG+S+GFGAA    KV
Sbjct:   10 CKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDL-LYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 79/182 (43.41%), Postives = 110/182 (60.44%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W   +P+ +EE++V PPKA EVR+K+L   IC +D     G  +  FP +LGHE  G+VES+G+ V  +K GD VIP F+ +C EC  C S   NLC K    +  GLMPDG++R + +G+ ++H    ST TEY VV    V K+  +  L     + CG+S+G+GAA +  KVE
Sbjct:   10 CKAAVLWEPKKPFSIEEVEVAPPKAHEVRIKILATGICRSDDHVITGALVRPFPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSACLSTKGNLCSKNDIGSASGLMPDGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAVAKIAAAAPLEKVCLIGCGFSTGYGAAVQTAKVE 191          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 79/182 (43.41%), Postives = 109/182 (59.89%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W   +P+ +EE++V PPKA EVRVK++   IC +D     G  +  FP +LGHE  G+VES+G+ V  +K GD VIP F+ +C EC  C S   NLC K        LMPDG+SR + +G+ ++H    ST TEY V+    V K+D +  L     + CG+S+G+GAA +  KVE
Sbjct:    9 CKAAVLWEPKKPFSIEEVEVAPPKAHEVRVKIIATGICRSDDHVISGVLVMPFPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSVCLSTKGNLCRKNDIGPASALMPDGTSRFTCKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVE 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 77/183 (42.08%), Postives = 110/183 (60.11%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH--GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W   +P+ +EE++V PPKA EVR+K++   IC +D     G     FP +LGHE  G+VES+G++V  LK GD VIP F+ +C EC +C S   NLC+K   +    GLM DG++R + +G+ ++H    ST TEY VV      K+D +  L     + CG+S+G+GA  +  KVE
Sbjct:    9 CKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMPFPVILGHEAAGVVESVGEKVTLLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVE 191          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.871e-38
Identity = 80/191 (41.88%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEK 623
            ++   +TCKA V W   +P  +E++ V PPK  EVR+K+    +CHTD  +  G  P   FP +LGHEG G+VESIG+ V  +K GD VI  +  EC EC+ C S   NLC K   T   G+MPDG+SR + +G+++ H   CST ++Y VV    VV ++P  +   A  L CG ++G+GAA     V+K
Sbjct:    5 TVGKPITCKAAVAWEAAKPLSIEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEGVTNVKVGDHVIALYTPECGECKFCKSGKTNLCGKIRATQGKGVMPDGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQK 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHG-LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            +TCKA V W   +P  +E+++V PP+A EVR+++L+ ++CHTD  +  G  P  LFP +LGHE  G+VES+G+ V ++K GD VIP++  EC EC+ C S   NLC K    T  G +M D  SR S++G+ +YH    ST ++Y VV    V K+ P   L     L CG  +G GA W   KVE
Sbjct:    7 ITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATGVGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPTGLGAVWNTAKVE 192          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 78/182 (42.86%), Postives = 109/182 (59.89%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA + W   +P+ +EEI+V PPKA EVR+K+L   IC +D   + G      P +LGHE  G+VES G+ V  LK GD VIP F+ +C EC  C     NLC++    +  GLM DG+SR + +G+ ++H    ST TEY VV    V ++D +  L     + CG+S+G+GAA K+ KVE
Sbjct:    9 CKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPLPMILGHEAAGVVESTGEGVTSLKPGDKVIPLFVPQCGECMPCLKSNGNLCIRNDLGSPSGLMADGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVE 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.417e-37
Identity = 81/186 (43.55%), Postives = 112/186 (60.22%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEK 623
            +TCKA V W   +P  +E+I+V+PP+  EVR+K+LY  +CHTD  +  G  P  +FP +LGHEG G+VESIG+ V  +K GD VIP +I EC  C+ CTS   NLC K   T   G MPDG++R   +G++++H    ST ++Y V+       V     L     L CG ++GFGAA    KVE+
Sbjct:    8 ITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDSYTLSGSDPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTNLCSKIRITQGKGQMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGITTGFGAAKITAKVEE 193          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADH1_CHICK9.814e-3940.00Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH6_PONAB1.674e-3842.86Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH6_HUMAN1.674e-3842.86Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_APTAU2.186e-3843.41Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH1_STRCA2.855e-3843.41Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_COTJA2.855e-3842.08Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
FADH_CANMA4.871e-3841.88S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADHX_PEA6.361e-3843.01Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADH1_ALLMI6.361e-3842.86Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADHX_DICDI1.417e-3743.55Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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