FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.851e-37
Identity = 80/209 (38.28%), Postives = 116/209 (55.50%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            +TC A V W  GEP  +EE++V PP+  E+R+K++  S+C +D+ + +     L PR+ GHE  G+VESIG+ V E ++GD V+  F GEC  C +C S  +N+C        GLM  D  +R SI+G+ +YH    S+ +EY VV +   VKVDP   L     LSCG ++G GAAW    V+K                  GA+++G
Sbjct:   14 ITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWES--QSLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRG 220          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.851e-37
Identity = 80/184 (43.48%), Postives = 110/184 (59.78%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY---PFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W   +P+ + EI+V PPKA EVR+K+L + IC +D     G     FP +LGHE  G+VES+G+ V  +K GD VIP F+ +C EC +C     N+C K    PFT  GL+ DG+SR + +G+ +YH     T TEY V   + VVK+D S  L     + CG+S+G+GAA    KV+
Sbjct:    9 CKAAVVWEPKKPFSIVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVNFPIILGHEAAGVVESVGEGVTSMKPGDKVIPIFLPQCGECNSCRHPRGNVCKKSELGPFT--GLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQ 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 77/187 (41.18%), Postives = 112/187 (59.89%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILS-SKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA + W  G+P  VEEI+V PPK  EVRVK++   +C TD  + +  F   +FP +LGHEG G+VESIG  V + K GD VIP ++ +C  C+ C +   NLC     +K P +   +M DG+SR + +G+ +YH    ST +EY VV  + + K+D +  L     + CG+S+G+GAA    +VE
Sbjct:    9 CKAAIAWEAGKPLSVEEIEVSPPKDHEVRVKIVATGVCRTDEHAINPSFKEGVFPVILGHEGAGIVESIGQGVSKFKPGDKVIPLYMPQCGHCKFCLNPKTNLCEKISKIKTPISDQEVMSDGTSRFTCKGKPIYHFMGTSTFSEYTVVSESSLAKIDAAAPLDKVCLIGCGFSTGYGAAINTAQVE 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 80/187 (42.78%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTD--ILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA + W  G+P  +EE++V PPKA EVR++++  S+CHTD  ++ SK F    FP ++GHE  G+VESIG  V  +K GD VIP +   CR+C+ C S + NLC     LK P +   LM D +SR + +G+ +YH F  ST ++Y VV    + K+D   +L     L CG+S+G+GAA    KV
Sbjct:   10 CKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSK-FEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKV 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 77/180 (42.78%), Postives = 108/180 (60.00%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W + +P+ +EE++V PPKA EVR+KM+ A IC +D     G  +   P + GHE  G+VESIG+ V  ++ GD VIP FI +C +C  C     NLCLK      G M DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K  KV
Sbjct:   10 CKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKV 189          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.033e-37
Identity = 84/211 (39.81%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHG-LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            +TCKA V +   +P  +E++QV PP+A EVRVK+L+ ++CHTD  +  G  P  LFP +LGHE  G+VES+G+ V +++ GD VIP +  EC+EC+ C S   NLC K    T  G +M D  SR S+ G+ +YH    ST ++Y VV    V K++P   L     L CG  +G GA W   KVE                  +GA+  G
Sbjct:   10 ITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGVGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAG 220          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.200e-36
Identity = 77/185 (41.62%), Postives = 107/185 (57.84%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA + W  G P  +EEI+V PPKA EVR++++   +C TDI ++      LFP VLGHE  G+VES+G  V   K GD VIP F  +C+ C+ C S + NLC      KYP     LM D +SR + +G+ +YH    S+ ++Y VV    + +VD   +L     + CG+SSG+GAA    KV
Sbjct:   10 CKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKV 194          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 80/184 (43.48%), Postives = 108/184 (58.70%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLP-LFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEK 623
            CKA V W  G+   +EEI+V PP+A EVRVK+ +  +CHTD  +  G      FP V GHEG G+VES+G+ V+ +K GD V+  +  ECREC+ C S   NLC K   T   GL+PDG+SR   +G+ L+H   CS+ ++Y VV    VVKV           L CG ++G+GAA    K+ K
Sbjct:   10 CKAAVAWEAGKDLSIEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKGLLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISK 193          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 80/186 (43.01%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEK 623
            M  +A V +G G P ++ EI V PPK  EV VK+ +  +CHTD  +  G  P  LFP VLGHEG G+V  +G+ V  +K GD VIP +  EC EC+ CTS   NLC+    T   G+MPD +SR  + GQ LYH   CST +EY VV    + K++P  +      L CG ++G GA     KV++
Sbjct:    1 MKSRAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVMPDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQE 186          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 79/185 (42.70%), Postives = 106/185 (57.30%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            M  +A V +  G+P ++ EI V PPK  EV +K+ +  +CHTD  +  G  P  +FP VLGHEG G+V  +G+ V  +K GD VIP +  EC ECE C S   NLC+    T   GLMPDG++R S  GQ LYH   CST +EY VV    + K++P  +      L CG ++G GA     KV+
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADHL6_ARATH1.851e-3738.28Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH1B_UROHA1.851e-3743.48Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH4_STRCA4.123e-3741.18Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH4_HUMAN4.123e-3742.78Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1S_HORSE5.385e-3742.78Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADHX_MAIZE7.033e-3739.81Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADH4_MOUSE1.200e-3641.62Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
FADH_PICPA1.567e-3643.48S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
FRMA_PASPI2.673e-3643.01S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
FRMA_SHISS5.954e-3642.70S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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