FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.016e-35
Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            +TCKA + W    P  +EEI+V PPKA EVR+K++   +C TDI ++      LFP VLGHE  G+VES+G  V   K GD VIP F  +C++C+ C S + NLC      KYP     LM D +SR + + + +YH    S+ ++Y VV    + +VD   +L     + CG++SG+GAA    KV
Sbjct:    8 ITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKV 194          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.016e-35
Identity = 75/181 (41.44%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W E +P+ +EE++V PPKA EVR+KM+   IC +D     G  +   P + GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K  KV
Sbjct:   10 CKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 73/186 (39.25%), Postives = 109/186 (58.60%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDI-LSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-----PFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA + W  G+P  +EE++V PPKA EVRV+++ AS+C +D  + +  F   L P +LGHE  G+VES+G  V   K GD VIP ++  CR+C+ C S + N C K+     P     LM D +SR + +G+ +YH    S  ++Y VV    + K+D   +L     + CG+S+G+GAA  + KV
Sbjct:   10 CKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKV 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.263e-35
Identity = 77/178 (43.26%), Postives = 104/178 (58.43%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAA 599
            + CKA V W    P  +E +QV PP+  EVR+K++ + +CHTD  +  G  P  LFP +LGHEG G+VES+G +V  ++ GD VI  +  EC+ C+ C S   NLC +   T   GLMPDG+SR S  G  L H   CST +EY VV    VV ++    L     L CG ++G+GAA
Sbjct:   11 INCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAA 188          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +E+++V PPKA EVR+KM+   IC TD     G  +   P +LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C S   N C+K   +   G + DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A    KV
Sbjct:   10 CKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPLPAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKSPEGNYCVKNDLSNPRGTLQDGTRRFTCRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +E+++V PPKA EVR+KM+   IC TD     G  +   P +LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A    KV
Sbjct:   10 CKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.040e-35
Identity = 78/185 (42.16%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            M  +A V +  G+P ++ EI V PPK  EV +K+ +  +CHTD  +  G  P  +FP VLGHEG G+V  +G+ V  +K GD VIP +   C ECE C S   NLC+    T   GLMPDG++R S  GQ LYH   CST +EY VV    + K++P  +      L CG ++G GA     KV+
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 74/183 (40.44%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPL-FPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA VCWG  +P  +EEI+V PPK  EVRVK++   IC +D     G    + FP +LGHE  G+VES+G+ V + K GD VIP F+ +C EC  C +  +NLC K     + G++ D +SR + +G+ +++  + ST TEY V+D   V K+     L     + CG+S+G+G+A    KV+
Sbjct:    9 CKAAVCWGPKQPLSIEEIEVAPPKRHEVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKVIPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLLDKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVK 191          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +EE++V PPKA EVR+KM+ A IC +D     G  +   P +LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + DG+ R +  G+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A K  KV
Sbjct:   10 CKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +E+++V PPKA EVR+KM+   IC TD     G  +   P +LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A    KV
Sbjct:   10 CKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADH4_RAT1.016e-3540.64Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH1E_HORSE1.016e-3541.44Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADHQ_RABIT1.326e-3539.25Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
FADH2_SCHPO2.263e-3543.26Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1B_PAPHA3.859e-3540.33Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH1B_PANTR3.859e-3540.33Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
FRMA_ECOL65.040e-3542.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1_RANPE6.583e-3540.44Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH1G_HUMAN6.583e-3540.88Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1B_HUMAN6.583e-3540.33Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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