FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 74/187 (39.57%), Postives = 110/187 (58.82%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTD--ILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-----PFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA + W  G+P  +EE++V PPKA EVRV++  A +C +D  +++ K F     P +LGHEG G+VES+G  V  +K GD VIP +I  C++C+ C S + N C K+     P     LM D +SR + +G+ +YH F  S  ++Y VV    + K+D   +L     + CG+S+G+GAA    KV
Sbjct:   10 CKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQINAAGLCRSDTHVINPK-FEGAFLPVILGHEGAGIVESVGPGVTNVKPGDKVIPLYIPHCKKCKFCLSPLTNFCEKFCKGKNPLIEQELMEDKTSRFTCKGKSIYHFFGISAFSQYTVVKDVNLAKIDDDANLERVCLIGCGFSTGYGAAINTAKV 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 76/182 (41.76%), Postives = 111/182 (60.99%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDI-LSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +E+I+V PPKA EVR+KM+   +C +D  + S+    PL P VLGHEG G+VES+G+ V  +K GD VIP F  +C +C  C     NLC+K       G + DG+SR + RG+ +++  + ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K  KV
Sbjct:   10 CKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSRSLASPL-PAVLGHEGAGIVESVGEGVTSVKPGDKVIPLFTPQCGKCRICKHPEYNLCMKNDLMQPRGTLLDGTSRFTCRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 77/181 (42.54%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W  G P  +EEI V PPK  EVRVKM+ A IC TDI S     L P  P ++GHEG G+VES+G+ V  +K GD VI   + +C EC  C +   N+C +   +   L  +G+SR++ +G+  Y   T  T +EY+V+    V KVD    L  A  + CG+++GFGAA    KV
Sbjct:   10 CKAAVLWKPGAPLTMEEIDVAPPKGKEVRVKMVAAGICGTDIKSLDNKKLAPFCPIIMGHEGTGIVESVGEGVSTVKTGDKVIILCLPQCGECNTCLNSKNNICKEVRLSGTHLTSEGNSRITCKGKTTYQYITTGTFSEYIVIKEISVAKVDEDALLEKACIIGCGFATGFGAAINSAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 76/182 (41.76%), Postives = 108/182 (59.34%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +E+I+V PPKA EVR+KM+   +C +D  +  G      P VLGHEG G+VESIG+ V  +K GD VIP F  +C +C  C    +NLC   K      G + DG+SR S RG+ ++H  + ST ++Y VVD   V K+D +  L     + CG+S+G+G+A +  KV
Sbjct:   10 CKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTPLPAVLGHEGAGIVESIGEGVTCVKPGDKVIPLFSPQCGKCRICKHPESNLCCQTKNLTQPKGALLDGTSRFSCRGKPIHHFISTSTFSQYTVVDDIAVAKIDAAAPLDKVCLIGCGFSTGYGSAVQVAKV 191          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 72/181 (39.78%), Postives = 108/181 (59.67%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +E+++V PPKA EVR+KM+   IC TD     G  +   P +LGHE  G+VES+G+ V  ++ GD VIP  + +C +C  C +   N CLK   +   G + DG+SR + RG+ ++H    ST ++Y VVD N V K+D +  +     + CG+S+G+G+A K  KV
Sbjct:   10 CKAAVLWEVMKPFSIEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPLPVILGHEAAGIVESVGEGVTTVEPGDKVIPLALPQCGKCRICKTPERNYCLKNDVSNPRGTLQDGTSRFTCRGKPIHHFLGVSTFSQYTVVDENAVAKIDAASPMEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +EE++V PPKA EVR+KM+   IC TD     G  +   P +LGHE  G+VES+G+ V  +K GD VIP  I +C +C  C +  +N CLK   +   G + DG+SR + R + ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A    KV
Sbjct:   10 CKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 72/181 (39.78%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +EE++V PPKA EVR+KM+   IC +D     G  +   P +LGHE  G+VE +G+ V  +K GD VIP F  +C +C  C +  +N C K   +   G M DG+ R +  G+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G A K  KV
Sbjct:   10 CKAAVLWEVKKPFSIEEVEVAPPKAHEVRIKMVAVGICRSDDHVVSGTLVTPLPAILGHEAAGIVEGVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCFKNDLSNPRGTMQDGTRRFTCGGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGPAVKVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.267e-34
Identity = 76/190 (40.00%), Postives = 108/190 (56.84%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSS-KGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK-YPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            ++   + CKA V W   +P  +EEI+V+ P A E+R+K++   +CHTD+    +G     FP VLGHEG G+VES+G  V E + G+ VIP FI +C EC  C S   N C+K +      +M    +R + +G+K+      ST ++Y VV+   V K+DPS  L     L CG S+GFGAA    KVE
Sbjct:    2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVE 191          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 75/184 (40.76%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTD---ILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V W   +P+ +EE++V PPKA EVR+KM+   IC +D   +  S   PLP+   +LGHE  G+VESIG+ V  +K GD VIP F  +C +C  C    +N CL        G++ DG+SR + +G+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K  KV
Sbjct:   10 CKAAVLWQLNKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHAVTGSIAVPLPV---ILGHEAAGIVESIGEGVTTVKPGDKVIPLFTPQCGKCRICKHPESNFCLINDLGKPKGMLLDGTSRFTCKGKPIHHFIGTSTFSQYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 77/185 (41.62%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            M  +A V +  G+P ++ EI V PP+  EV VK+ +  +CHTD  +  G  P  LFP VLGHEG G+V  +G+ V  ++ GD VIP +  EC +C  C S   NLC+    T   G+MPDG+SR S  GQ LYH   CST +EY VV    + K++P  +      L CG ++G GA     KV+
Sbjct:    1 MKSRAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVMPDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADHP_RABIT8.598e-3539.57Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADH1_PERMA8.598e-3541.76Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH6_PERMA1.467e-3442.54Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADH1_RAT1.467e-3441.76Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1A_MACMU1.467e-3439.78Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADH1A_HUMAN1.467e-3440.88Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1G_PAPHA2.502e-3439.78Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1_GADCA3.267e-3440.00Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADH1_RABIT5.573e-3440.76Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
FRMA_SYNY39.506e-3441.62S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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