FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SALAI (Anthranilate phosphoribosyltransferase OS=Salinispora arenicola (strain CNS-205) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-22
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGD----AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            L  AM+++A +VE   D    AVD+VGTGGD A+TVNIST AS++ A  G +V K             DVLE LG+ +DL PEGV  CV EAGIGF  + ++HP M+   PV
Sbjct:   61 LVEAMLQHAVRVELPEDLRATAVDVVGTGGDLAHTVNISTMASLVVAGAGVRVVKHGNRAASSSCGTADVLEFLGLPLDLGPEGVAACVAEAGIGFCFAARFHPGMRHAGPV 172          

HSP 2 Score: 27.7202 bits (60), Expect = 6.123e-22
Identity = 18/50 (36.00%), Postives = 28/50 (56.00%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAE-AQASLDYLLNEADEALISAFLVLLRAKGETFGE 360
            +L+  L+   +L+ A+ A A  + +   A  A I+ F + LRAKGET  E
Sbjct:    8 QLLAALLRGDELSTADTAWAMGEIMSGSAGSAQIAGFAIALRAKGETPAE 57          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_DESAA (Anthranilate phosphoribosyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=trpD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.973e-22
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  359 RAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            R+M + AT+++      VD  GTGGDGA+T NIST ++ + A CG  VAK             DVLEALGV +D  PE V + ++E GIGF+ +  YH AM+   P
Sbjct:   59 RSMRRKATRIQVSSNTVVDTCGTGGDGASTFNISTTSAFVVAGCGVTVAKHGNRSVSSKCGSADVLEALGVKLDTHPEVVEQGIEEIGIGFLFAPMYHSAMRFAMP 164          

HSP 2 Score: 37.7354 bits (86), Expect = 7.973e-22
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  208 FNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            F+EL+  ++S  DL E E    +D +++ E +   I+AF+  L  KGETF E
Sbjct:    2 FSELLKKIVSGQDLAEDETTTMMDAIMSGEVEVPAIAAFMAALATKGETFTE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOPS (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain BisB5) GN=trpD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22
Identity = 54/96 (56.25%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            V+   DAVDIVGTGGDG+ +VN+ST AS + A CG  VAK             DVL ALGV ID+ PE V RCV EAGIGFM +  +HPAMK V P
Sbjct:   70 VDAPADAVDIVGTGGDGSGSVNVSTCASFIVAGCGVPVAKHGNRALSSKSGAADVLNALGVRIDITPEHVGRCVTEAGIGFMFAPTHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSF (Anthranilate phosphoribosyltransferase OS=Geobacter sp. (strain FRC-32) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.037e-21
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            +D+VGTGGDG NT NIST  S + AACG KVAK             DV+EALG+ +++ PE V  C++EAGIGF+ +   H AMK
Sbjct:   90 LDVVGTGGDGTNTFNISTTVSFVVAACGVKVAKHGNRSVSSACGSADVVEALGISLEVTPETVENCINEAGIGFLYAPALHGAMK 174          

HSP 2 Score: 34.2686 bits (77), Expect = 1.037e-21
Identity = 18/45 (40.00%), Postives = 29/45 (64.44%), Query Frame = 1
Query:  229 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            ++ R DL+++E    +D +++ EA  A I+AF+  LR KGET  E
Sbjct:    9 VVEREDLSQSEMIQVMDQIMSGEATPAQIAAFITALRMKGETVAE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_NATPD (Anthranilate phosphoribosyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=trpD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.038e-21
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            VD  GTGGDG +T+N+ST +S + A  G  VAK             DVLE +GV ID +P  V  C++E G+GFM++  +HPAMK V
Sbjct:   74 VDTCGTGGDGHDTINVSTTSSFVVAGAGVPVAKHGNYSVSSSSGSADVLEEIGVTIDAEPPAVETCIEETGMGFMLAPVFHPAMKAV 160          

HSP 2 Score: 38.5058 bits (88), Expect = 1.038e-21
Identity = 20/36 (55.56%), Postives = 24/36 (66.67%), Query Frame = 1
Query:  244 DLTEAEAQASLDYLLNEADEALISAFLVLLRAKGET 351
            DLT+AEA+ +   +  EA EA I A L  LRAKGET
Sbjct:   13 DLTQAEAREAASLVFEEATEAQIGALLSALRAKGET 48          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_ARTS2 (Anthranilate phosphoribosyltransferase OS=Arthrobacter sp. (strain FB24) GN=trpD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.348e-21
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            L  AM+ +A  V+  G+ +DIVGTGGD  NTVNIST A+++ A  GAKV K             DVLEALGV +DL  E V R  +EAGI F  +  +HP+ +
Sbjct:   69 LVEAMLAHANPVDIAGEKLDIVGTGGDQLNTVNISTMAALVCAGAGAKVVKHGNRASSSSSGSADVLEALGVRLDLPIERVARNAEEAGITFCFAQVFHPSFR 171          

HSP 2 Score: 36.965 bits (84), Expect = 1.348e-21
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  217 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            LI  LI+  DLT    + ++D +++ EA  + I+ FLV LR+KGET  E
Sbjct:   17 LISALINGADLTADNTEWAMDTIMSGEATPSQIAGFLVALRSKGETVDE 65          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOPT (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  401 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            DAVDIVGTGGDG+ +VN+ST AS + A CG  VAK             DVL ALGV ID+ PE V RCV+EAGIGFM +  +HPAMK V P
Sbjct:   75 DAVDIVGTGGDGSGSVNVSTCASFVVAGCGVTVAKHGNRALSSKSGAADVLAALGVKIDITPEQVGRCVNEAGIGFMFAPTHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOPA (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris GN=trpD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  401 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            DAVDIVGTGGDG+ +VN+ST AS + A CG  VAK             DVL ALGV ID+ PE V RCV+EAGIGFM +  +HPAMK V P
Sbjct:   75 DAVDIVGTGGDGSGSVNVSTCASFVVAGCGVTVAKHGNRALSSKSGAADVLAALGVKIDITPEQVGRCVNEAGIGFMFAPTHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METBF (Anthranilate phosphoribosyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.752e-21
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VD  GTGGDG NT+NIST A+I+ AA G  VAK             DVL+ALG+  DL+PE VR+ ++E GIGFM +  +HPAMK V  V
Sbjct:   75 VDTCGTGGDGLNTINISTAAAIVTAAAGVPVAKHGNRAATSMSGSSDVLDALGIKTDLEPEAVRQTIEEIGIGFMFAPVFHPAMKRVAGV 164          

HSP 2 Score: 30.4166 bits (67), Expect = 1.752e-21
Identity = 15/35 (42.86%), Postives = 23/35 (65.71%), Query Frame = 1
Query:  244 DLTEAEAQASLDYLLNEADEALISAFLVLLRAKGE 348
            DL+  EA+ ++  +L+ A +  I  FL+ LRAKGE
Sbjct:   13 DLSPEEAEDAVGKILSTAQDEEIGRFLLALRAKGE 47          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_STRAW (Anthranilate phosphoribosyltransferase OS=Streptomyces avermitilis GN=trpD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.754e-21
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            L RAM ++A  +E  G  VDIVGTGGDGA TVNIST +SI+ A  GAKV K             DVLE LG+ + L P+ V    +EAGI    + K+HPA++ V
Sbjct:   72 LVRAMYEHANLIEVPGATVDIVGTGGDGAKTVNISTMSSIVVAGTGAKVVKHGNRAASSASGSSDVLEKLGINLQLTPKRVAEVAEEAGITICFAVKFHPALRHV 176          

HSP 2 Score: 32.3426 bits (72), Expect = 1.754e-21
Identity = 19/50 (38.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            E+++ L+   D +  +   ++D ++  EA +A I+ FLV LRAKGET  E
Sbjct:   19 EVLNGLLDGRDQSADDTAWAMDRIMRGEATDAQIAGFLVALRAKGETVEE 68          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_SALAI6.123e-2248.21Anthranilate phosphoribosyltransferase OS=Salinisp... [more]
TRPD_DESAA7.973e-2243.40Anthranilate phosphoribosyltransferase OS=Desulfat... [more]
TRPD_RHOPS9.926e-2256.25Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_GEOSF1.037e-2150.59Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_NATPD1.038e-2145.98Anthranilate phosphoribosyltransferase OS=Natronom... [more]
TRPD_ARTS21.348e-2146.60Anthranilate phosphoribosyltransferase OS=Arthroba... [more]
TRPD_RHOPT1.693e-2158.24Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_RHOPA1.693e-2158.24Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_METBF1.752e-2152.22Anthranilate phosphoribosyltransferase OS=Methanos... [more]
TRPD_STRAW1.754e-2147.62Anthranilate phosphoribosyltransferase OS=Streptom... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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