FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_ANAD2 (Anthranilate phosphoribosyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=trpD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.664e-18
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            +D  GTGGDG +T NIST A+ +AA  G  VAK             DVL ALGV +D D E V RC++E GIGF+ + + HPA K +  V
Sbjct:   76 IDTCGTGGDGRHTFNISTTAAFVAAGAGVCVAKHGNRAVSSRSGSADVLAALGVNVDADKETVERCIEEVGIGFLFAVRLHPAFKAIAGV 165          

HSP 2 Score: 27.7202 bits (60), Expect = 4.664e-18
Identity = 19/45 (42.22%), Postives = 23/45 (51.11%), Query Frame = 1
Query:  229 LISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGE 360
            L+   DLT AEA   +  + +  A  A   AFL  LR KGET  E
Sbjct:    9 LLEGEDLTRAEAALVMTEIADGGATPAQSGAFLAALRMKGETVDE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_BURVG (Anthranilate phosphoribosyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=trpD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDGA+T NIST +  + AA GAKVAK             DVLEALGV IDL P+ V   + E G+GFM +  +HPAMK +  V
Sbjct:   80 VDIVGTGGDGAHTFNISTASMFVTAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPDQVAASIAETGMGFMFAPNHHPAMKNIAAV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_DELAS (Anthranilate phosphoribosyltransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 49/97 (50.52%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VE     VDIVGTGGDGANT NIST +  + AA G KV+K             D +EALGV I L PE + R + + GIGFM +  +HPAMK V PV
Sbjct:   74 VEDKRHLVDIVGTGGDGANTFNISTCSIFVIAAAGGKVSKHGGRSVSSKSGSADAMEALGVNIQLTPEQIARSIADVGIGFMFAPNHHPAMKNVAPV 170          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_BURM1 (Anthranilate phosphoribosyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  383 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            +V+   + VDIVGTGGDG++T NIST +  + AA GAKVAK             DVLEALGV IDL P+ V   + E G+GFM +  +HPAMK +  V
Sbjct:   72 EVQDNSNFVDIVGTGGDGSHTFNISTASMFVTAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPDQVAASIAETGMGFMFAPNHHPAMKNIAAV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_STRM5 (Anthranilate phosphoribosyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST A  +AAA GA+VAK             D +EALG  I+L P  V   +++ GIGFM +  +HP+MKVV PV
Sbjct:   80 VDIVGTGGDGSHTFNISTCAMFVAAAAGARVAKHGNRSVSSKSGSADAVEALGAAIELQPAQVAAAIEQTGIGFMFAPIHHPSMKVVAPV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_POLNS (Anthranilate phosphoribosyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  359 RAMIKYAT--KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + M ++AT  +V+     VD+VGTGGDGA+T NIST A  +AA  GAK+AK             DVLEALGV + L  + V +C+   G GFM +  +HPAMK V P+
Sbjct:   62 QVMREFATSVQVDDRTHLVDVVGTGGDGAHTFNISTAAMFVAAGTGAKIAKHGNRSVSSKSGSADVLEALGVNLALSADQVAKCISTVGTGFMFAPNHHPAMKNVVPI 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_MYCSJ (Anthranilate phosphoribosyltransferase OS=Mycobacterium sp. (strain JLS) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 56/127 (44.09%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  290 MKLMRP*LVLFLFCSEPKEKHLERAMIKYATKV--EGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            MKL RP        +  +   L   M+K+A ++  + +G + VDIVGTGGDGANTVN+ST A+I+ AA G  V K             D LEALGV IDL PE V   V E GIGF  + ++HP+ K
Sbjct:   56 MKLKRP--------TSAEVTELADVMLKHARRIPTDVIGNETVDIVGTGGDGANTVNLSTMAAIVVAAAGVPVMKHGNRAASSLSGGADTLEALGVRIDLGPEQVAASVAEVGIGFAFANQFHPSYK 174          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METPP (Anthranilate phosphoribosyltransferase OS=Methylibium petroleiphilum (strain PM1) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VD+ GTGGD A+T NIST A  +AAA GA+VAK             DVLEALG  IDL P  V  C+ E+GIGFM +  +HPAMK   PV
Sbjct:   79 VDLCGTGGDAAHTFNISTTAMFVAAAAGARVAKHGGRSVSSTSGSADVLEALGASIDLAPAQVAECLAESGIGFMFAPNHHPAMKHAGPV 168          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_GEOLS (Anthranilate phosphoribosyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            +D+VGTGGDG NT NIST  S + +ACG KVAK             DVLE LGV +D+ PE V RC++E GIGF+ +   H AMK
Sbjct:   90 LDVVGTGGDGTNTFNISTTVSFIVSACGVKVAKHGNRSVSSACGSADVLEKLGVNLDVTPEQVERCINEIGIGFLFAPALHGAMK 174          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CHLT3 (Anthranilate phosphoribosyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=trpD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.025e-17
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  359 RAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            RA++ +A +    GD +D  GTGGDGANT NIST AS++A ACG KVAK             DVLEA+G  IDL  +       E G  F+ +  +H AMK V PV
Sbjct:   60 RAILNHAEQPILEGDPIDTCGTGGDGANTFNISTAASLIAHACGVKVAKHGNRSISSRCGSADVLEAMGFKIDLPKKETEELFKETGFVFLFAPIFHKAMKNVAPV 165          

HSP 2 Score: 23.483 bits (49), Expect = 1.025e-17
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  310 ISAFLVLLRAKGETFGE 360
            I+AFLVLLR +GE   E
Sbjct:   38 IAAFLVLLRQRGEEVEE 54          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_ANAD24.664e-1846.67Anthranilate phosphoribosyltransferase OS=Anaeromy... [more]
TRPD_BURVG5.098e-1853.33Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_DELAS6.658e-1850.52Anthranilate phosphoribosyltransferase OS=Delftia ... [more]
TRPD_BURM16.658e-1848.98Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_STRM58.696e-1851.11Anthranilate phosphoribosyltransferase OS=Stenotro... [more]
TRPD_POLNS8.696e-1845.37Anthranilate phosphoribosyltransferase OS=Polynucl... [more]
TRPD_MYCSJ8.696e-1844.09Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_METPP8.696e-1853.33Anthranilate phosphoribosyltransferase OS=Methylib... [more]
TRPD_GEOLS8.696e-1851.76Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_CHLT31.025e-1745.28Anthranilate phosphoribosyltransferase OS=Chlorohe... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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