FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_POLSJ (Anthranilate phosphoribosyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trpD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.433e-20
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  359 RAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + M +++TKV        VDIVGTGGDG++T NIST +  +AAA GAKV+K             DV+EALG+ I+L PE + +C++EAG+GFM +  +HPAMK V P+
Sbjct:   66 QVMREFSTKVHVADKTHLVDIVGTGGDGSHTFNISTCSMFVAAAAGAKVSKHGGRSVSSKSGSADVMEALGININLMPEAIAKCIEEAGVGFMFAPNHHPAMKNVAPI 173          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_NITHX (Anthranilate phosphoribosyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=trpD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.433e-20
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            AM     +V    DAVD+VGTGGDG+ +VN+ST AS + A  G  VAK             D L ALG+ IDL PE V RCV+EAGIGFM +  +HPAMK V P
Sbjct:   62 AMRSKMLRVTAPADAVDVVGTGGDGSGSVNVSTCASFIVAGAGVPVAKHGNRALSSKSGAADCLAALGIKIDLTPEQVGRCVNEAGIGFMFAPSHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_DEHSC (Anthranilate phosphoribosyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.872e-20
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            L   M   +T++      +DIVG GGDG NT NIST A+ + +  G KVAK             DVLEALG+ IDL+ E V+ C+++ GIGFM +  +HPAMK V P
Sbjct:   57 LANVMRAKSTRISTSTPVLDIVGIGGDGINTFNISTTAAFVISGAGIKVAKHGNRAASSMCGSADVLEALGIKIDLNAEQVKICIEQIGIGFMFAPVFHPAMKFVAP 163          

HSP 2 Score: 27.7202 bits (60), Expect = 1.872e-20
Identity = 18/50 (36.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            E I  L+    LT  ++ + +D ++  +   A I AFL  LR KGET  E
Sbjct:    4 EAIGSLVLGKSLTLEQSASVMDEIMEGKTTPAQIGAFLTALRVKGETAEE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_DEHE1 (Anthranilate phosphoribosyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.872e-20
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            L   M   +T++      +DIVG GGDG NT NIST A+ + +  G KVAK             DVLEALG+ IDL+ E V+ C+++ GIGFM +  +HPAMK V P
Sbjct:   57 LANVMRAKSTRISTSTPVLDIVGIGGDGINTFNISTTAAFVISGAGIKVAKHGNRAASSMCGSADVLEALGIKIDLNAEQVKICIEQIGIGFMFAPVFHPAMKFVAP 163          

HSP 2 Score: 27.7202 bits (60), Expect = 1.872e-20
Identity = 18/50 (36.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            E I  L+    LT  ++ + +D ++  +   A I AFL  LR KGET  E
Sbjct:    4 EAIGSLVLGKSLTLEQSASVMDEIMEGKTTPAQIGAFLTALRVKGETAEE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSL (Anthranilate phosphoribosyltransferase OS=Geobacter sulfurreducens GN=trpD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.434e-20
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            +D+VGTGGDG NT NIST  S + A+CG KVAK             DVLE+LGV +D+ PE V + + + GIGF+ +   H AMK
Sbjct:   90 LDVVGTGGDGTNTFNISTTVSFVVASCGVKVAKHGNRAVSSACGSADVLESLGVNLDVTPETVEQAIAKIGIGFLFAPALHGAMK 174          

HSP 2 Score: 36.5798 bits (83), Expect = 2.434e-20
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 1
Query:  229 LISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGE 360
            ++ R+DLTEAE    +D +++  A  A I+AF+  LR KGET  E
Sbjct:    9 VVERIDLTEAEMIEVMDQIMSGGATPAQIAAFITALRMKGETVEE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CLOK5 (Anthranilate phosphoribosyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.436e-20
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  404 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            A+D  GTGGDG  T NIST A+I+AA+ G KVAK             DVL+ LG+ I+L+   V  C+D  G+GF+ +  YH AMK V
Sbjct:   75 AIDTCGTGGDGGRTFNISTAAAIIAASAGVKVAKHGNRAVSSQSGSADVLKELGININLEKSKVEHCIDNVGMGFLFAPSYHSAMKNV 162          

HSP 2 Score: 36.1946 bits (82), Expect = 2.436e-20
Identity = 18/51 (35.29%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  211 NELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            NE I  ++S  DL+E++++  ++ ++N +   ALI+ FL+ L+ KGE+  E
Sbjct:    3 NEAIKEVLSGKDLSESQSEQVMENIMNGQESSALIAGFLIALKMKGESIPE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CLOK1 (Anthranilate phosphoribosyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.436e-20
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  404 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            A+D  GTGGDG  T NIST A+I+AA+ G KVAK             DVL+ LG+ I+L+   V  C+D  G+GF+ +  YH AMK V
Sbjct:   75 AIDTCGTGGDGGRTFNISTAAAIIAASAGVKVAKHGNRAVSSQSGSADVLKELGININLEKSKVEHCIDNVGMGFLFAPSYHSAMKNV 162          

HSP 2 Score: 36.1946 bits (82), Expect = 2.436e-20
Identity = 18/51 (35.29%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  211 NELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            NE I  ++S  DL+E++++  ++ ++N +   ALI+ FL+ L+ KGE+  E
Sbjct:    3 NEAIKEVLSGKDLSESQSEQVMENIMNGQESSALIAGFLIALKMKGESIPE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_XANP2 (Anthranilate phosphoribosyltransferase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 51/96 (53.12%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            VE   +AVD+VGTGGD + + NIST AS + A  G  VAK             DVL ALGV IDLDP G+ RC+ EAGIGFM +  +HPAMK V P
Sbjct:   70 VEAPSEAVDVVGTGGDASGSYNISTCASFIVAGAGVPVAKHGNRALSSKSGAADVLAALGVRIDLDPAGISRCIAEAGIGFMFAPSHHPAMKHVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOP2 (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=trpD PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  401 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            DAVD+VGTGGDG+ +VN+ST  S + A CG  VAK             DVL ALGV ID+ P+ V RCV EAGIGFM +  +HPAMK V P
Sbjct:   75 DAVDVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSSKSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_STRGG (Anthranilate phosphoribosyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.164e-20
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            L RAM  +A  +E  G  VDIVGTGGD A TVNIST ++I+ A  GAKV K             DVLE LGV ++L P  V    + AGI F  + K+HPA++
Sbjct:   72 LVRAMYAHANTIEVPGRTVDIVGTGGDLAKTVNISTMSAIVIAGTGAKVVKHGNRAASSASGSSDVLEKLGVNLELTPRRVVEVAEAAGITFCFAVKFHPALR 174          

HSP 2 Score: 34.2686 bits (77), Expect = 3.164e-20
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 1
Query:  217 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            L++ L+   DL+  E   ++D +++ EA +A I+ F V LRAKGET  E
Sbjct:   20 LLNPLLRGEDLSAEETAWAMDRIMSGEATDAQIAGFAVALRAKGETVDE 68          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_POLSJ1.433e-2047.22Anthranilate phosphoribosyltransferase OS=Polaromo... [more]
TRPD_NITHX1.433e-2050.96Anthranilate phosphoribosyltransferase OS=Nitrobac... [more]
TRPD_DEHSC1.872e-2044.86Anthranilate phosphoribosyltransferase OS=Dehaloco... [more]
TRPD_DEHE11.872e-2044.86Anthranilate phosphoribosyltransferase OS=Dehaloco... [more]
TRPD_GEOSL2.434e-2048.24Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_CLOK52.436e-2046.59Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD_CLOK12.436e-2046.59Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD_XANP22.445e-2053.13Anthranilate phosphoribosyltransferase OS=Xanthoba... [more]
TRPD_RHOP22.445e-2054.95Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_STRGG3.164e-2046.60Anthranilate phosphoribosyltransferase OS=Streptom... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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