FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RUBXD (Anthranilate phosphoribosyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  359 RAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            RAM ++A +V      VD  GTGGD   T+N+ST A+ +A   G  +AK             DVLEALG  I+L PE V RC++EAGIGFM +  +HPAM+ V PV
Sbjct:   59 RAMRRFAARVRAPEGVVDTCGTGGDAKGTINVSTAAAFVARGAGVVIAKHGNRAATSRAGSADVLEALGAAIELSPEQVSRCIEEAGIGFMFARTHHPAMRHVAPV 164          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RALPJ (Anthranilate phosphoribosyltransferase OS=Ralstonia pickettii (strain 12J) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  365 MIKYATKVEGLGDA----VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            M ++ATKV+   +     VDIVGTGGDGANT NIST +  +AAA GA++AK             DVLEALGV I L PE V   ++ AGIGFM +  +HPAMK V P+
Sbjct:   64 MREFATKVDVPAEVSDHFVDIVGTGGDGANTFNISTASMFVAAAAGARIAKHGGRGVSSKSGSADVLEALGVNIMLTPEQVAESIETAGIGFMFAPNHHPAMKNVAPI 171          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_NITWN (Anthranilate phosphoribosyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 2
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            AM     +V+   DAVD+VGTGGDG+ +VN+ST AS + A  G  VAK             D L ALG+ IDL PE V RC++EAGIGFM +  +HPAMK V P
Sbjct:   62 AMRSMMLRVKAPVDAVDVVGTGGDGSGSVNVSTCASFIVAGAGVTVAKHGNRALSSRSGAADCLAALGIRIDLTPEQVGRCINEAGIGFMFAPAHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOFD (Anthranilate phosphoribosyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  359 RAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + M +++TKV        VDIVGTGGDG++T NIST A  +AAA GA+V+K             DV+E+LGV I+L PE + +C+++ G+GFM +  +HPAMK V PV
Sbjct:   66 QVMREFSTKVNVADTSHLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVSKHGGRSVSSKSGSADVMESLGVNINLSPEAIAQCIEQVGVGFMFAPNHHPAMKNVAPV 173          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RALEH (Anthranilate phosphoribosyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=trpD PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST +  +AAA GAK+AK             DVLEALGV I L PE V +C++E GIGFM +  +HPAMK V P+
Sbjct:   79 VDIVGTGGDGSHTFNISTASMFVAAAAGAKIAKHGNRGVSSKSGSADVLEALGVNIMLTPEQVGQCIEETGIGFMFAPTHHPAMKNVAPI 168          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RALEJ (Anthranilate phosphoribosyltransferase OS=Ralstonia eutropha (strain JMP134) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  359 RAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + M ++A KVE     + VDIVGTGGDG++T NIST +  +AAA GAK+AK             DVLEALGV I L PE V +C+ + GIGFM +  +HPAMK V P+
Sbjct:   89 QVMREFANKVEVTDRENFVDIVGTGGDGSHTFNISTASMFVAAAAGAKIAKHGNRGVSSKSGSADVLEALGVNIMLTPEQVGQCIAQTGIGFMFAPTHHPAMKNVAPI 196          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_BRASO (Anthranilate phosphoribosyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=trpD PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  383 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            +V+   +AVDIVGTGGDG+ +VN+ST AS + A  G  VAK             DVL ALGV IDL P+ V RC+ EAGIGFM +  +HPAMK V P
Sbjct:   69 RVDAPANAVDIVGTGGDGSGSVNVSTCASFIVAGAGVPVAKHGNRALSSRSGAADVLAALGVKIDLKPDQVGRCIREAGIGFMFAPAHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_THEFY (Anthranilate phosphoribosyltransferase OS=Thermobifida fusca (strain YX) GN=trpD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.965e-20
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            L + M+ +A  +   G  +DIVGTGGD A+TVN+ST ASI+A+A GA+V K             DVLE LGV+IDLDP       +E  I F  +  YHP++K
Sbjct:   61 LAQGMLDHAVTISVPGATLDIVGTGGDRAHTVNVSTMASIVASAAGARVVKHGNRAASSSCGTADVLERLGVIIDLDPADAVAVAEEVDITFCFAPLYHPSLK 163          

HSP 2 Score: 31.187 bits (69), Expect = 6.965e-20
Identity = 16/52 (30.77%), Postives = 32/52 (61.54%), Query Frame = 1
Query:  208 FNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            ++ LI  L++   LT  + + +++ +++  A +A I+ F + LRAKGE+  E
Sbjct:    6 WSHLISALLNGTSLTADDTKWAMNEIMSGSATDAQIAGFAIALRAKGESVAE 57          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_THICR (Anthranilate phosphoribosyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=trpD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.969e-20
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            VD  GTGGDGANT NIST ++ +AAA GAKVAK             D+LE  GV ++L PE V  CV+  G+GFM +  +H AMK V
Sbjct:   78 VDTCGTGGDGANTFNISTASAFVAAAAGAKVAKHGSRSVSSQSGSADLLEKAGVNLNLTPEQVAECVETVGVGFMYAPAHHSAMKHV 164          

HSP 2 Score: 33.113 bits (74), Expect = 6.969e-20
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            + ++ L+++ DLT  + +  +  L++ +A  A I+A LV LRAKGET  E
Sbjct:    5 DALEQLLNKHDLTAEQMEWVMQMLMSGQATSAQIAAILVALRAKGETVEE 54          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_HALMA (Anthranilate phosphoribosyltransferase OS=Haloarcula marismortui GN=trpD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.974e-20
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  389 EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            EGL   VD  GTGGD  NT+N+ST ++I+AA  G  +AK             DVLE +GV I+ +P  V   ++  GIGFM++  +HPAMK V
Sbjct:   71 EGL---VDTCGTGGDDYNTINVSTTSAIVAAGAGVPIAKHGNYSVSSSSGSADVLEEVGVDIEAEPPDVEETIERDGIGFMLAPVFHPAMKAV 160          

HSP 2 Score: 39.6614 bits (91), Expect = 6.974e-20
Identity = 23/49 (46.94%), Postives = 29/49 (59.18%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGE 360
            E I+ +    DLT+AEA+A    +  +A EA I A L  LRAKGET  E
Sbjct:    3 EYIERVTDGDDLTQAEARAVATTVFEDATEAQIGALLTALRAKGETEAE 51          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_RUBXD3.193e-2046.23Anthranilate phosphoribosyltransferase OS=Rubrobac... [more]
TRPD_RALPJ3.193e-2050.93Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_NITWN3.193e-2050.00Anthranilate phosphoribosyltransferase OS=Nitrobac... [more]
TRPD_RHOFD4.170e-2046.30Anthranilate phosphoribosyltransferase OS=Rhodofer... [more]
TRPD_RALEH4.170e-2055.56Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_RALEJ5.447e-2050.00Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_BRASO5.447e-2052.58Anthranilate phosphoribosyltransferase OS=Bradyrhi... [more]
TRPD_THEFY6.965e-2044.66Anthranilate phosphoribosyltransferase OS=Thermobi... [more]
TRPD_THICR6.969e-2050.57Anthranilate phosphoribosyltransferase OS=Thiomicr... [more]
TRPD_HALMA6.974e-2044.09Anthranilate phosphoribosyltransferase OS=Haloarcu... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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