FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_NITMS (Anthranilate phosphoribosyltransferase OS=Nitrosopumilus maritimus (strain SCM1) GN=trpD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  365 MIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            M +++ K+E    G  +D+ GTGGD   T NIST AS + AA G  VAK             D+ E  G  ++L+P  +   +++  I FM + K+HPAMK V
Sbjct:   61 MQEFSLKIEPKNTGTIIDMCGTGGDKLQTFNISTTASFVVAAAGGVVAKHGNRSSSGISGSADIFEYFGYDLNLEPPKIAEILEKHNICFMFAQKFHPAMKHV 163          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_HELPY (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori GN=trpD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  365 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            ++++A K    G D +D  GTGGDG  T+NIST A+++A++ G  +AK             D+LE LGV I+++P  +  C  +   GF+ +  YH + K   P+
Sbjct:   60 LLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMNPTQLENCFKQTHFGFLFAPLYHQSFKKSAPL 164          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_HELPJ (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori J99 GN=trpD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  365 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            ++++A K    G D +D  GTGGDG  T+NIST A+++A++ G  +AK             D+LE LGV I+++P  +  C  ++  GF+ +  YH + K   P+
Sbjct:   60 LLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMNPMQLENCFKQSHFGFLFAPLYHQSFKKSAPL 164          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_LISMO (Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes GN=trpD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.099e-11
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  398 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            G A+D  GTGGD +N+ NIST ++ + AA G  VAK             DV + LG+ I+L PE +   +++ GI F+ +   HP MK V  V
Sbjct:   72 GTAMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINLRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDV 164          

HSP 2 Score: 22.3274 bits (46), Expect = 3.099e-11
Identity = 15/52 (28.85%), Postives = 27/52 (51.92%), Query Frame = 1
Query:  220 IDCLISRVDLTEAEAQASLDYLLNEADEALIS-----AFLVLLRAKGETFGE 360
            ++ L+ +V   E  ++  ++ +  E  E  +S     AFL+ L+ KGET  E
Sbjct:    1 MEILLQKVYDQENLSKEEMNIIATEIFEGRLSKTKMAAFLMALKVKGETAEE 52          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_LISMF (Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.099e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  353 LERAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + +AM + A +V    G A+D  GTGGD +N+ NIST ++ + AA G  VAK             DV + LG+ I++ PE +   +++ GI F+ +   HP MK V  V
Sbjct:   56 IAQAMQRVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDV 164          

HSP 2 Score: 22.7126 bits (47), Expect = 3.099e-11
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  310 ISAFLVLLRAKGETFGE 360
            I+AFL+ L+ KGET  E
Sbjct:   36 IAAFLMALKVKGETAEE 52          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_LISMC (Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=trpD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.099e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  353 LERAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + +AM + A +V    G A+D  GTGGD +N+ NIST ++ + AA G  VAK             DV + LG+ I++ PE +   +++ GI F+ +   HP MK V  V
Sbjct:   56 IAQAMQRVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDV 164          

HSP 2 Score: 22.7126 bits (47), Expect = 3.099e-11
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  310 ISAFLVLLRAKGETFGE 360
            I+AFL+ L+ KGET  E
Sbjct:   36 IAAFLMALKVKGETAEE 52          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SULIY (Anthranilate phosphoribosyltransferase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=trpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  359 RAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            RAM + A K++ + +A+D  GTGGDG  TVN+ST ++IL +     VAK             DVLEALG  I + PE  +  + +    F+ +  YHPAMK V  V
Sbjct:   60 RAMRELAIKID-VPNAIDTAGTGGDGLGTVNVSTASAILLSLINP-VAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELIHKTNFVFLFAQYYHPAMKNVANV 163          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SULIN (Anthranilate phosphoribosyltransferase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=trpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  359 RAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            RAM + A K++ + +A+D  GTGGDG  TVN+ST ++IL +     VAK             DVLEALG  I + PE  +  + +    F+ +  YHPAMK V  V
Sbjct:   60 RAMRELAIKID-VPNAIDTAGTGGDGLGTVNVSTASAILLSLINP-VAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELIHKTNFVFLFAQYYHPAMKNVANV 163          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SULIL (Anthranilate phosphoribosyltransferase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=trpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  359 RAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            RAM + A K++ + +A+D  GTGGDG  TVN+ST ++IL +     VAK             DVLEALG  I + PE  +  + +    F+ +  YHPAMK V  V
Sbjct:   60 RAMRELAIKID-VPNAIDTAGTGGDGLGTVNVSTASAILLSLINP-VAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELIHKTNFVFLFAQYYHPAMKNVANV 163          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_STRGC (Anthranilate phosphoribosyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=trpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  404 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            A+D  GTGGD + + NIST A+ + A  G K+AK             DVLEALG+ +DLD   + +  ++ GI F+ +   HPAMK + P
Sbjct:   74 AMDNCGTGGDKSFSFNISTTAAFVLAGGGIKMAKHGNRSISSKSGSADVLEALGINLDLDATSLGKVFEQTGIVFLFAKNMHPAMKYIMP 163          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_NITMS2.709e-1136.89Anthranilate phosphoribosyltransferase OS=Nitrosop... [more]
TRPD_HELPY2.709e-1134.29Anthranilate phosphoribosyltransferase OS=Helicoba... [more]
TRPD_HELPJ2.709e-1134.29Anthranilate phosphoribosyltransferase OS=Helicoba... [more]
TRPD_LISMO3.099e-1138.71Anthranilate phosphoribosyltransferase OS=Listeria... [more]
TRPD_LISMF3.099e-1135.78Anthranilate phosphoribosyltransferase OS=Listeria... [more]
TRPD_LISMC3.099e-1135.78Anthranilate phosphoribosyltransferase OS=Listeria... [more]
TRPD_SULIY3.539e-1139.62Anthranilate phosphoribosyltransferase OS=Sulfolob... [more]
TRPD_SULIN3.539e-1139.62Anthranilate phosphoribosyltransferase OS=Sulfolob... [more]
TRPD_SULIL3.539e-1139.62Anthranilate phosphoribosyltransferase OS=Sulfolob... [more]
TRPD_STRGC3.539e-1140.00Anthranilate phosphoribosyltransferase OS=Streptoc... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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