FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOPB (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            AM     +V    DAVD+VGTGGDG+ +VN+ST AS + A  G  VAK             DVL ALGV ID+ P  V RC+ EAGIGFM +  +HPAMK V P
Sbjct:   62 AMRSKMLRVTAPADAVDVVGTGGDGSGSVNVSTCASFIVAGAGVPVAKHGNRALSSKSGAADVLAALGVKIDITPAEVGRCIKEAGIGFMFAPTHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHILO (Anthranilate phosphoribosyltransferase OS=Rhizobium loti GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  383 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            +VE    A+DIVGTGGD +++VNISTG++ + AA G  VAK             DVL ALGV ID+ P+ + RC+ EAG+GFM +  +HPAMK V P
Sbjct:   69 RVEAPAGAIDIVGTGGDNSHSVNISTGSAFVIAAAGVPVAKHGNRGLSSLTGAADVLIALGVKIDIPPDAIGRCIHEAGVGFMFAPAHHPAMKHVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SALTO (Anthranilate phosphoribosyltransferase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=trpD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.178e-19
Identity = 52/112 (46.43%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  353 LERAMIKYATKV----EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            L  AM+ +A  V    E    AVD+VGTGGD A+TVNIST AS++ A  G +V K             DVLE LG+ +DL PE V  CV EAGIGF  + ++HP M+   PV
Sbjct:   61 LVEAMLTHAVPVNLPAELRATAVDVVGTGGDLAHTVNISTMASLVVAGAGVRVVKHGNRAASSSCGTADVLEFLGLPLDLGPEAVATCVAEAGIGFCFAARFHPGMRHAGPV 172          

HSP 2 Score: 25.7942 bits (55), Expect = 1.178e-19
Identity = 18/46 (39.13%), Postives = 25/46 (54.35%), Query Frame = 1
Query:  217 LIDCLISRVDLTEAE-AQASLDYLLNEADEALISAFLVLLRAKGET 351
            L+  L+   +L  A+ A A  + +   A  A I+ F V LRAKGET
Sbjct:    9 LLAALLRGDELCTADTAWAMGEIMSGSAGPAQIAGFAVALRAKGET 54          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METSB (Anthranilate phosphoribosyltransferase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=trpD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.178e-19
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVV 667
            AM     +V+   DA+DIVGTGGDG +T N+ST A+++ +ACG  VAK             DVL ALGV I LD   V  C++ AG+ FM +  +H AM+ V
Sbjct:   62 AMRARMLRVDAPADAMDIVGTGGDGHSTYNVSTLAALIVSACGVPVAKHGNRAASSQSGASDVLSALGVKIGLDSREVEACLEAAGVAFMSAQAHHAAMRHV 163          

HSP 2 Score: 32.3426 bits (72), Expect = 1.178e-19
Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 1
Query:  217 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            L+  L +   LT+AEA  + D +    A  A + AFL+ LR +GET  E
Sbjct:    7 LLGKLATGASLTQAEATRAFDLIFEGAATPAQLGAFLMALRVRGETIDE 55          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METRJ (Anthranilate phosphoribosyltransferase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.178e-19
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            AM    T+V    +AVD+VGTGGD + +VN+ST A+I+ AACG  VAK             DVL ALGV + LDP    RC+DEAG+ F+ +  +HPAM+ V  V
Sbjct:   62 AMRARMTRVAAPENAVDVVGTGGDHSGSVNVSTLAAIVVAACGVPVAKHGNRAATSRSGAADVLAALGVRLGLDPAAQARCLDEAGLCFLFAQAHHPAMRHVAAV 166          

HSP 2 Score: 26.5646 bits (57), Expect = 1.178e-19
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  247 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            L  AEA+A+ D LL+ E       AFL  L+ +GE+  E
Sbjct:   17 LDRAEARAAFDDLLSGEVTPVQAGAFLTALKVRGESVEE 55          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_AGRRK (Anthranilate phosphoribosyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=trpD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-19
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            VE   DA+DIVGTGGDG  T NIST A+ + A  G  VAK             D    LG+ +D+ PE + RC+ EAGIGFM +  +H +M+ V P
Sbjct:   70 VEAPADAIDIVGTGGDGFGTYNISTLAAFIVAGAGVPVAKHGNRAQSSKAGTADTQSVLGIKLDIGPEVIARCIREAGIGFMFAQLHHSSMRHVGP 165          

HSP 2 Score: 32.3426 bits (72), Expect = 1.179e-19
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 1
Query:  235 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            +R  LT  EA+ + D L++ EA  + I AFL+ LR +GET  E
Sbjct:   13 NREVLTRDEARQAFDILMSGEATPSQIGAFLMALRVRGETVDE 55          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SALRD (Anthranilate phosphoribosyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=trpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  359 RAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + M ++A  VE      +D+ GTGGDGA+T NIST AS +AA  GA VAK             DVLEALGV IDL+ EGV  C+ EAGI F+ +  +HPAM+ V PV
Sbjct:   58 KTMREFAVSVETDDPQTIDLCGTGGDGASTFNISTTASFIAAGAGATVAKHGNRSVSSQSGSADVLEALGVQIDLEKEGVEHCLHEAGIAFLFAPFFHPAMRHVMPV 164          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RALME (Anthranilate phosphoribosyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=trpD PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST +  +AAA GAK+AK             DVLEALGV I L PE V  C+++ GIGFM +  +HPAMK V P+
Sbjct:   80 VDIVGTGGDGSHTFNISTASMFVAAAAGAKIAKHGNRGVSSKSGSADVLEALGVNIMLTPEQVGECIEQTGIGFMFAPTHHPAMKNVAPI 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_MYCS2 (Anthranilate phosphoribosyltransferase OS=Mycobacterium smegmatis GN=trpD PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  290 MKLMRP*LVLFLFCSEPKEKHLERAMIKYATKV--EGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            MK+ RP        SE +E  L   M+ +A +V  + +G D VDIVGTGGDGANTVN+ST ASI+ AACG  V K             D LEALGV IDL P+ V R V E GIGF  + ++HP+ K
Sbjct:   63 MKMKRP------TASEVRE--LADIMLTHARRVPTDEIGTDTVDIVGTGGDGANTVNLSTMASIVVAACGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDDVARSVREVGIGFAFAPQFHPSYK 181          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_HERA2 (Anthranilate phosphoribosyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=trpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 50/93 (53.76%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  398 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            G  VD  GTGGD +NT NIST A+ +AA  GA VAK             DVLE LGV I+LD EGV RC+ +AGIGFM + K+HPAM+   PV
Sbjct:   73 GGVVDTCGTGGDHSNTFNISTTAAFVAAGAGATVAKHGNRAMSSKCGSADVLEGLGVNIELDAEGVARCLRQAGIGFMFAPKFHPAMRYAGPV 165          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_RHOPB7.114e-2050.00Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_RHILO9.291e-2049.48Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_SALTO1.178e-1946.43Anthranilate phosphoribosyltransferase OS=Salinisp... [more]
TRPD_METSB1.178e-1944.12Anthranilate phosphoribosyltransferase OS=Methyloc... [more]
TRPD_METRJ1.178e-1946.67Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_AGRRK1.179e-1944.79Anthranilate phosphoribosyltransferase OS=Agrobact... [more]
TRPD_SALRD1.213e-1949.53Anthranilate phosphoribosyltransferase OS=Saliniba... [more]
TRPD_RALME1.213e-1954.44Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_MYCS21.213e-1948.03Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_HERA21.213e-1953.76Anthranilate phosphoribosyltransferase OS=Herpetos... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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