FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_AGRVS (Anthranilate phosphoribosyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.994e-19
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  401 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            D++DIVGTGGDG  T NIST A+++ A  G  VAK             D L ALGV +D+DP  + RC+ EAG+GFM +  +H AM+ V P
Sbjct:   75 DSIDIVGTGGDGTGTYNISTLAALIVAGAGVPVAKHGNKALSSKSGAADSLTALGVKLDIDPSVIGRCISEAGVGFMFAQLHHSAMRHVGP 165          

HSP 2 Score: 28.4906 bits (62), Expect = 1.994e-19
Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  247 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            LT  EA  + + L++ EA  A I  FL+ LR +GET  E
Sbjct:   17 LTRDEAADAFNILMSGEATPAQIGGFLIALRMRGETVPE 55          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_ROSS1 (Anthranilate phosphoribosyltransferase OS=Roseiflexus sp. (strain RS-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 53/108 (49.07%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            + R M   A  V      +D  GTGGDGA T NIST A+ +AA  GA VAK             DVLE LGV I+LD   V RC+D+AGIGFM + K+HPAM+ V PV
Sbjct:   58 MARVMRAKAIPVHFDAPLLDTCGTGGDGAGTFNISTTAAFIAAGAGAIVAKHGNRAMSSVCGSADVLEGLGVNIELDAASVARCLDQAGIGFMFAQKFHPAMRFVGPV 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOSR (Anthranilate phosphoribosyltransferase OS=Rhodococcus sp. (strain RHA1) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  338 PKE-KHLERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            P+E + L  +M+ +A KV    D VDIVGTGGD +NTVNIST AS++ AA G +V K             DVLEALGV I+L P+ V RCV E GIGF  +  +HPA++
Sbjct:   68 PEELRGLADSMLGHARKVPVDDDVVDIVGTGGDRSNTVNISTMASLVVAASGIRVVKHGNRAASSKSGGADVLEALGVKINLGPDEVARCVREVGIGFCFAPVFHPALR 176          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHOOB (Anthranilate phosphoribosyltransferase OS=Rhodococcus opacus (strain B4) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  338 PKE-KHLERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            P+E + L  +M+ +A KV    D VDIVGTGGD +NTVNIST AS++ AA G +V K             DVLEALGV I+L P+ V RCV E GIGF  +  +HPA++
Sbjct:   68 PEELRGLADSMLGHARKVPVDDDVVDIVGTGGDRSNTVNISTMASLVVAASGIRVVKHGNRAASSKSGGADVLEALGVKINLGPDEVARCVREVGIGFCFAPVFHPALR 176          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_STRMK (Anthranilate phosphoribosyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            V    + VDIVGTGGDG++T NIST A  +AAA GA+VAK             D LEALG VI+L P+ V   +D  GIGFM +  +HP+MKVV PV
Sbjct:   73 VADTSNLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVAKHGNRSVSSKSGSADALEALGAVIELQPDQVAAAIDRTGIGFMFAPIHHPSMKVVAPV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD1_RALSO (Anthranilate phosphoribosyltransferase 1 OS=Ralstonia solanacearum GN=trpD1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  365 MIKYATKVEG----LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            M ++AT V+     L   VDIVGTGGDGANT NIST +  +AAA GA++AK             DVLEALGV I L PE V + ++  GIGFM +  +HPAMK V P+
Sbjct:   64 MREFATTVDVPAAILDHFVDIVGTGGDGANTFNISTASMFVAAAAGARIAKHGGRGVSSKSGSADVLEALGVNIMLTPEQVAQSIEAVGIGFMFAPNHHPAMKNVAPI 171          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_PELPD (Anthranilate phosphoribosyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.371e-19
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            +D+VGTGGDG NT N+ST  + + +ACG KVAK             DVLE LGV +D+ PE V +C+ + GIGF+ +   H AM+
Sbjct:   90 LDVVGTGGDGTNTFNVSTTVAFVVSACGVKVAKHGNRSVSSLCGSADVLEKLGVNLDITPETVEQCITKIGIGFLFAPALHGAMR 174          

HSP 2 Score: 31.9574 bits (71), Expect = 3.371e-19
Identity = 18/45 (40.00%), Postives = 25/45 (55.56%), Query Frame = 1
Query:  229 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            ++ + DLTE E    +  ++  EA  A I AF+  LR KGET  E
Sbjct:    9 IVEQKDLTEGEMIEVMGQIMTGEATPAQIGAFITALRMKGETIDE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_DIAST (Anthranilate phosphoribosyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDGANT NIST A+ + AA GAKV+K             D +EALGV I+L P  + +C+ + GIGFM +  +HPAMK V PV
Sbjct:   81 VDIVGTGGDGANTFNISTCATFVIAAAGAKVSKHGGRSVSSKSGSADAMEALGVHINLQPAQIAQCIGDVGIGFMFAPNHHPAMKNVAPV 170          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_BURXL (Anthranilate phosphoribosyltransferase OS=Burkholderia xenovorans (strain LB400) GN=trpD PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  383 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            +V+   + VDIVGTGGDG++T NIST    ++AA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAMK + PV
Sbjct:   72 EVQDNSNFVDIVGTGGDGSHTFNISTATMFVSAAAGAKVAKHGGRSVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMKNIAPV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_BURP8 (Anthranilate phosphoribosyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            V+   + VDIVGTGGDG++T NIST    ++AA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAMK + PV
Sbjct:   72 VQDNSNFVDIVGTGGDGSHTFNISTATMFVSAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASITETGMGFMFAPNHHPAMKNIAPV 168          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_AGRVS1.994e-1947.25Anthranilate phosphoribosyltransferase OS=Agrobact... [more]
TRPD_ROSS12.070e-1949.07Anthranilate phosphoribosyltransferase OS=Roseifle... [more]
TRPD_RHOSR2.070e-1949.54Anthranilate phosphoribosyltransferase OS=Rhodococ... [more]
TRPD_RHOOB2.070e-1949.54Anthranilate phosphoribosyltransferase OS=Rhodococ... [more]
TRPD_STRMK2.703e-1951.55Anthranilate phosphoribosyltransferase OS=Stenotro... [more]
TRPD1_RALSO2.703e-1950.00Anthranilate phosphoribosyltransferase 1 OS=Ralsto... [more]
TRPD_PELPD3.371e-1945.88Anthranilate phosphoribosyltransferase OS=Pelobact... [more]
TRPD_DIAST3.530e-1953.33Anthranilate phosphoribosyltransferase OS=Diaphoro... [more]
TRPD_BURXL3.530e-1951.02Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURP83.530e-1951.55Anthranilate phosphoribosyltransferase OS=Burkhold... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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