FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_ACISJ (Anthranilate phosphoribosyltransferase OS=Acidovorax sp. (strain JS42) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDGANT NIST A+ + AA GAKV+K             D +EALGV I+L P  + +C+ + GIGFM +  +HPAMK V PV
Sbjct:   81 VDIVGTGGDGANTFNISTCATFVIAAAGAKVSKHGGRSVSSKSGSADAMEALGVHINLQPAQIAQCIGDVGIGFMFAPNHHPAMKNVAPV 170          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METLZ (Anthranilate phosphoribosyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=trpD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.386e-19
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  398 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            G  VD  GTGGDG NT NIST A+  AA  G  V K             DVLEALG+ ID+ PE V   +DE GIGFM +  +HPAMK
Sbjct:   74 GMLVDTCGTGGDGKNTFNISTAAAFTAAGAGVTVVKHGNRGATSKCGSADVLEALGIKIDISPERVCEIIDENGIGFMFAQSHHPAMK 161          

HSP 2 Score: 28.8758 bits (63), Expect = 4.386e-19
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  214 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGE 360
            E I  + S  DL+  EA+ ++ D +   A +  I AFL  L  KGET  E
Sbjct:    4 ECIKKVASHSDLSVYEAKGAMQDIMSGNATDGQIGAFLTALVMKGETSSE 53          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_THERP (Anthranilate phosphoribosyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=trpD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            +D+VGTGGDG  T NIST  + + A  G  VAK             DVLEALGV IDL+P  V RCV+EAGIGFM + ++HPA++   PV
Sbjct:   77 IDVVGTGGDGNRTFNISTATAFVVAGAGVPVAKHGNRAMSSRAGSADVLEALGVRIDLNPSAVARCVEEAGIGFMFAQRFHPALRHAAPV 166          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_BRAJA (Anthranilate phosphoribosyltransferase OS=Bradyrhizobium japonicum GN=trpD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  401 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            DAVDIVGTGGDG+ +VN+ST AS + +  G  VAK             DVL +LGV IDL PE V RCV E GIGFM +  +HPAMK V P
Sbjct:   75 DAVDIVGTGGDGSGSVNVSTCASFIVSGAGVPVAKHGNRALSSRSGAADVLASLGVRIDLRPEQVGRCVRECGIGFMFAPAHHPAMKNVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_RHISN (Anthranilate phosphoribosyltransferase OS=Rhizobium sp. (strain NGR234) GN=trpD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  386 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRP 673
            VE   DA+DIVGTGGDGA T NIST AS++ A  G  VAK             D L  LGV +D+ PE + RC+ EAG+GFM + ++H AM+ V P
Sbjct:   70 VEAPEDAIDIVGTGGDGAGTYNISTLASLIVAGAGVPVAKHGNRALSSKSGTADALSCLGVKLDIGPEAIARCIREAGVGFMFAQQHHSAMRHVGP 165          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_XANCP (Anthranilate phosphoribosyltransferase OS=Xanthomonas campestris pv. campestris GN=trpD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   + + GIGFM +  +HPAMKVV PV
Sbjct:   80 VDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_XANCB (Anthranilate phosphoribosyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   + + GIGFM +  +HPAMKVV PV
Sbjct:   80 VDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_XANC8 (Anthranilate phosphoribosyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   + + GIGFM +  +HPAMKVV PV
Sbjct:   80 VDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPV 169          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METKA (Anthranilate phosphoribosyltransferase OS=Methanopyrus kandleri GN=trpD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  365 MIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            M+++A KV+  +   VD  GTGGD  +T N ST A + AAA G  VAK             D+LEALGV I+ DP+ V+RC++E G GFM + K+HPAMK V PV
Sbjct:   59 MMEHAVKVDPDVERLVDTAGTGGDELDTFNASTLAGLTAAAAGVPVAKHGNRSVTSECGSADILEALGVNIEADPDTVKRCIEEVGFGFMFAPKFHPAMKNVMPV 163          
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_XANC5 (Anthranilate phosphoribosyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   +   GIGFM +  +HPAMKVV PV
Sbjct:   80 VDIVGTGGDGSDTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVASALAHTGIGFMYAPVHHPAMKVVAPV 169          
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_ACISJ3.530e-1953.33Anthranilate phosphoribosyltransferase OS=Acidovor... [more]
TRPD_METLZ4.386e-1951.14Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_THERP4.611e-1951.11Anthranilate phosphoribosyltransferase OS=Thermomi... [more]
TRPD_BRAJA4.611e-1954.95Anthranilate phosphoribosyltransferase OS=Bradyrhi... [more]
TRPD_RHISN6.022e-1948.96Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_XANCP7.865e-1956.67Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_XANCB7.865e-1956.67Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_XANC87.865e-1956.67Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_METKA7.865e-1947.62Anthranilate phosphoribosyltransferase OS=Methanop... [more]
TRPD_XANC51.027e-1856.67Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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