FC930841

Overview
NameFC930841
Unique NameFC930841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930841 vs. ExPASy Swiss-Prot
Match: PMM_CAEEL (Probable phosphomannomutase OS=Caenorhabditis elegans GN=F52B11.2 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 102/214 (47.66%), Postives = 129/214 (60.28%), Query Frame = 1
Query:  136 MLEFMRELRKVVTVGVVGGSDLSKISEQLGK------------------------TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL-DDFNEFTLLG-TNLQGGNDH 699
            M EF+ E RK V + +VGGSD  KI+EQL                           V+  +DY FSENGL   K  +    QS++  +G  KL+E INF L Y++D+ +P+KRG F+EFR+GM+N+SPIGR+CSQEER +F  +DK H IR K    LREKF    L F+IGGQIS DVFP GWDKT+CL+YL  DF+     G     GGNDH
Sbjct:    1 MREFLIEARKRVPLAIVGGSDFKKITEQLADHDKDLCMSLLIFFFELQILISSFFPVLSLFDYTFSENGLYGFKGTEPYPVQSIQKAIGDAKLQELINFALRYMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKFGQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDH 214          
BLAST of FC930841 vs. ExPASy Swiss-Prot
Match: PMM_BABBO (Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 89/211 (42.18%), Postives = 123/211 (58.29%), Query Frame = 1
Query:   76 LALFDVDGTLTAPRKAATPQMLEFMREL-RKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKF--AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEFTLLGTNL-QGGND 696
            + +FD+DGTLT P +     + + +R   RK   + VV GS   KI  QL    IDE+DYVFSENG   +    L+ +  +   +   KL++ + F L YIADLDIP KRGTFIE R  ++NI P GRNCS  +R  F  YD IH++R K++ VL+ +F      L+F  GGQIS DV+P+ W K+  L ++   +     G N  +GGND
Sbjct:    5 MLIFDMDGTLTDPVQVINNDVKDILRRCKRKNFEIAVVSGSKYEKIKGQLNDGFIDEFDYVFSENGTQVYVKNVLVKSLDITEAIPETKLRKMVEFCLRYIADLDIPTKRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHHVRQKLIQVLKSQFDSDDCPLSFVAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGND 215          
The following BLAST results are available for this feature:
BLAST of FC930841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM_CAEEL1.021e-4847.66Probable phosphomannomutase OS=Caenorhabditis eleg... [more]
PMM_BABBO5.997e-4142.18Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34109F03EF PostHarvP1 Citrus clementina cDNA clone C34109F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930841 ID=FC930841; Name=FC930841; organism=Citrus clementina; type=EST; length=699bp
GACGCTATTCATTCACTTCTATTCAGATAAATCTATACATTTCAAACTCC
AATGGCTGCTAGGAAGCAAGGTTTATTAGCTCTCTTTGATGTTGACGGAA
CTCTCACGGCTCCGAGAAAGGCGGCAACACCACAAATGTTAGAGTTCATG
CGGGAACTGAGAAAGGTTGTTACAGTTGGAGTCGTCGGTGGATCTGATCT
TTCTAAGATATCAGAGCAGCTTGGGAAGACAGTTATTGATGAATACGATT
ATGTGTTTTCTGAGAATGGTCTTGTGGCTCATAAGGATGGGAAATTAATT
GGCACACAGAGCTTGAAATCATTTCTTGGAGGCGAAAAGCTCAAGGAATT
CATAAATTTTACTCTTCATTACATTGCTGACTTGGACATTCCAATTAAAA
GGGGAACTTTCATTGAATTCCGAAGTGGGATGCTTAATATTTCACCAATT
GGGCGAAACTGCAGCCAAGAAGAAAGGGACGAGTTTGAGAGGTATGACAA
GATTCACAATATACGGCCAAAAATGGTATCTGTGCTTCGGGAGAAGTTTG
CTCACCTTAACTTGACATTTTCAATTGGAGGACAGATAAGCTTTGATGTG
TTTCCCCAGGGATGGGACAAGACATACTGCTTGAGATACCTTGATGACTT
CAATGAATTCACTCTTTTGGGGACAAACTTACAGGGAGGGAATGATCAT
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