FC930846

Overview
NameFC930846
Unique NameFC930846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: ARK72_HUMAN (Aflatoxin B1 aldehyde reductase member 2 OS=Homo sapiens GN=AKR7A2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 61/215 (28.37%), Postives = 95/215 (44.19%), Query Frame = 1
Query:   88 PLGRYRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARHF 732
            P  R   +S     RV+ + LG M +G         M    S A + AF+  G   +DTA  Y + QSE  +G         D            R  +  K N  +       S+   +  SL++LQ   +D+ YLH  DH T +EE + +   L ++GK + LG+S+  +W VA   T  +++G    ++Y G +N   R  E ++ P  RHF
Sbjct:   23 PEARALAMSRPPPPRVASV-LGTMEMGRR-------MDAPASAAAVRAFLERGHTELDTAFMYSDGQSETILGGLGLGLGGGD-----------CRVKIATKANPWDGKSLKPDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQRLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGMYNATTRQVETELFPCLRHF 218          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: YRPG_BACSU (Uncharacterized oxidoreductase yrpG OS=Bacillus subtilis GN=yrpG PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 65/219 (29.68%), Postives = 100/219 (45.66%), Query Frame = 1
Query:  100 YRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNY----QNEQSEAWIGEWMA-ARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMIL-----SVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMAR 726
            Y  L  T G+RVS L LG M+ G           ++ +F ++D  +  G  F DTAN Y        +E+ IG+W A     R+++VL TK        V    + PN   N  R + L      +  SL++LQTD I++  +H  D  T  +EI ++    V  GKV Y+G S+   W +  A   A             +++++ R  E ++LP AR
Sbjct:    3 YTYLGRT-GLRVSRLCLGTMNFGV-------DTDEKTAFRIMDEALDNGIQFFDTANIYGWGKNAGLTESIIGKWFAQGGQRREKVVLATK--------VYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMHHIDRRTPWDEIWEAFETQVRSGKVDYIGSSNFAGWHLVKAQAEAEKRRFMGLVTEQHKYSLLERTAEMEVLPAAR 205          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: TAS_SHIFL (Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 57/227 (25.11%), Postives = 107/227 (47.14%), Query Frame = 1
Query:  121 AGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQ-------NEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHW--------------WDHTTSIEEIMDSLHILVE---QGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            + + VS L LG M+ G+         S+  + A LD  VA G N ID A  Y           +E ++G W+A   +R+++++ +K +   R++   KG  P+   + K ++  ++ DSL++LQTD++D+  +HW              W  +     ++D+L  L E    GK+ Y+G+S+  A+ V      A  H           ++++ R FE  +  ++++
Sbjct:    9 SSLEVSTLGLGTMTFGE-------QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNN--DKGIRPDQALDRK-NIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQY 225          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: TAS_ECOLI (Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 57/227 (25.11%), Postives = 107/227 (47.14%), Query Frame = 1
Query:  121 AGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQ-------NEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHW--------------WDHTTSIEEIMDSLHILVE---QGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            + + VS L LG M+ G+         S+  + A LD  VA G N ID A  Y           +E ++G W+A   +R+++++ +K +   R++   KG  P+   + K ++  ++ DSL++LQTD++D+  +HW              W  +     ++D+L  L E    GK+ Y+G+S+  A+ V      A  H           ++++ R FE  +  ++++
Sbjct:    9 SSLEVSTLGLGTMTFGE-------QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNN--DKGIRPDQALDRK-NIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQY 225          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 62/212 (29.25%), Postives = 98/212 (46.23%), Query Frame = 1
Query:  103 RVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFA-LLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVG---KGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMAR 726
            R+   + G+ VS   LG M +    S F G    E     L+   + +G   +DT++ Y    +E  +G+ +     R+++VL TKF       V+G   K     A       +  +   SL++L  D ID+ Y H  D    IE  +  L  LVE+GK+ Y+G+S+      A+A+T  RAH   P +     W++  RD E +I+P  R
Sbjct:   10 RIKLGSQGLEVSAQGLGCMGM----SAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYGPHTNEILLGKALKG-GTRERVVLATKFGI-----VLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSE------ASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCR 205          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 61/240 (25.42%), Postives = 109/240 (45.42%), Query Frame = 1
Query:   13 SHQQTTPFISYTMSDFFAAAPEPATPLGRYRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +H Q  P +S+ + +    +   +T + +YR L  + G+RVS L LG       W  F   +S E +  L+      G N  DTA  Y   ++E  +G+ +  +   R   V+ TK        +   G +    G  ++ +I  +R SL +LQ D++D+++ +  D  + +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   49 NHNQVLPLLSHILRE----STVKSTGM-KYRNLGKS-GLRVSCLGLGT------WVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTK--------IYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVETQLPELYH 268          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 58/212 (27.36%), Postives = 100/212 (47.17%), Query Frame = 1
Query:   97 RYRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +YR L  + G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  +R SL++LQ +++DV++ +  D+ T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   72 KYRNLGKS-GLRVSCLGLGT------WVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELYH 268          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 57/212 (26.89%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   97 RYRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +YR L  + G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  ++ SL++LQ +++DV++ +  D  T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   72 KYRNLGKS-GLRVSCLGLGT------WVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH 268          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 57/212 (26.89%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   97 RYRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +YR L  + G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  ++ SL++LQ +++DV++ +  D  T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   72 KYRNLGKS-GLRVSCLGLGT------WVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH 268          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 57/212 (26.89%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   97 RYRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +YR L  + G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  ++ SL++LQ +++DV++ +  D  T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   72 KYRNLGKS-GLRVSCLGLGT------WVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH 268          
The following BLAST results are available for this feature:
BLAST of FC930846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ARK72_HUMAN5.162e-1428.37Aflatoxin B1 aldehyde reductase member 2 OS=Homo s... [more]
YRPG_BACSU6.742e-1429.68Uncharacterized oxidoreductase yrpG OS=Bacillus su... [more]
TAS_SHIFL1.150e-1325.11Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1[more]
TAS_ECOLI1.150e-1325.11Protein tas OS=Escherichia coli (strain K12) GN=ta... [more]
A115_TOBAC1.502e-1329.25Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
KCAB3_XENLA2.833e-1225.42Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB1_CHICK2.833e-1227.36Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RAT8.241e-1226.89Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE8.241e-1226.89Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN8.241e-1226.89Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34109F08EF PostHarvP1 Citrus clementina cDNA clone C34109F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930846 ID=FC930846; Name=FC930846; organism=Citrus clementina; type=EST; length=733bp
GACCATCAATCTTCTCATCAACAAACAACACCCTTTATCTCATACACAAT
GAGTGATTTCTTCGCAGCTGCTCCTGAACCCGCCACCCCTCTGGGTCGGT
ACCGGGTCCTCTCCTCAACAGCAGGAGTCCGCGTCTCCCCCCTCCAGCTC
GGTGCAATGTCCATCGGTGACGCCTGGAGCCAATTTATGGGCAGCATGAG
CAAAGAACAATCTTTCGCACTGCTCGACGCCTTCGTTGCCGCCGGTGGCA
ACTTCATCGACACAGCAAACAACTATCAGAACGAGCAGTCGGAGGCCTGG
ATTGGCGAGTGGATGGCCGCACGCAACAACCGCGACCAGATCGTGCTACC
CACCAAGTTCACAACCGATTATCGCAGCCACGTAGTCGGGAAGGGCAACT
CTCCTAACGCCTGCGGGAACCACAAGCGCAGCATGATCCTCAGCGTCCGT
GACTCTCTCCGCAAACTCCAAACCGATTTCATCGATGTCCTCTACCTCCA
CTGGTGGGACCACACCACCTCCATCGAGGAAATCATGGACTCCCTCCACA
TACTCGTCGAGCAGGGCAAGGTCATGTACCTCGGGATCTCGGACTCACCC
GCGTGGGTCGTTGCCGCGGCGAACACTTATGCGCGTGCGCACGGCAAAAC
GCCTTTCTCCATTTACCCAGGGCGGTGGAACGTGATGCGCCGCGACTTCG
AGCGCGATATCCTGCCCATGGCGCGGCATTTCG
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