FC930846

Overview
NameFC930846
Unique NameFC930846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: YCCK_BACSU (Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 56/205 (27.32%), Postives = 103/205 (50.24%), Query Frame = 1
Query:  103 RVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILP 717
            R L  T  ++V  +  GA ++G        +++ E    L+   +  G NFIDTA  Y   +SE  IGE +  R  R+++++ TK      +H    G+      N +  +   V  SL++L+TD+ID+ Y+H+ D  T + E+  +L  L ++GK+  +G S+     +   N    A G     ++   +++++RD E+++LP
Sbjct:    5 RTLGKTK-LKVKRIGFGANAVGG--HNLFPNLNDETGKDLVRTALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATK-----GAHKEVDGSIE--LDNSREFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLDYQQLQDFN----ADGY--LEVFQAEYSLIQRDAEKELLP 193          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 57/211 (27.01%), Postives = 98/211 (46.45%), Query Frame = 1
Query:  100 YRVLSSTAGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            YR L  + G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  ++ SL++LQ +++DV++ +  D  T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   80 YRNLGKS-GLRVSCLGLGT------WVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH 275          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 54/204 (26.47%), Postives = 95/204 (46.57%), Query Frame = 1
Query:  121 AGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  ++ SL++LQ +++DV++ +  D  T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   97 SGLRVSCLGLGT------WVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH 286          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 54/204 (26.47%), Postives = 95/204 (46.57%), Query Frame = 1
Query:  121 AGVRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARN-NRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMARH 729
            +G+RVS L LG       W  F G +S E +  L+     +G N  DTA  Y   ++E  +G  +  +   R  +V+ TK        +   G +    G  ++ +I  ++ SL++LQ +++DV++ +  D  T +EEI+ ++  ++ QG  MY G S   A  +  A + AR     P       +++ +R+     LP   H
Sbjct:   97 SGLRVSCLGLGT------WVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTK--------LYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH 286          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: IOLS_BACSU (Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 51/200 (25.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  127 VRVSPLQLGAMSIGDAWSQFMGSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFERDILPMAR 726
            ++V P+ LG  ++G        ++++E    L+   +  G   +DTA  Y   +SE  IGE +    NR+ +V+ TK     + +     NSP+           SV +SL++L TD+ID+ Y+H+ D  T  +E +++L+ + + GK+  +G+S+     +  AN            +  G +N++ R+ E+   P  +
Sbjct:   11 LQVFPIGLGTNAVGG--HNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGE-VLREFNREDVVIATKAAHRKQGNDFVFDNSPDFLKK-------SVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLEQLKEANKDGLV------DVLQGEYNLLNREAEKTFFPYTK 194          
BLAST of FC930846 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 52/172 (30.23%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  190 GSMSKEQSFALLDAFVAAGGNFIDTANNYQNEQSEAWIGEWMAARNNRDQIVLPTKFTTDYRSHVVGKGNSPNACGNHKRSMILSVRDSLRKLQTDFIDVLYLHWWDHTTSIEEIMDSLHILVEQGKVMYLGISDSPAWVVAAANTYARAHGKTPFSIYPGRWNVMRRDFER 705
            G  S+E + A+L      G  F D+++ Y    +E  IG W      R +I L TKF  + ++   G+ +  N     ++++ LS    L++L  D ID+ Y+H +   T IE+IM +L   VE GK+ Y+G+S+       +ANT  RA    P S     ++    + ER
Sbjct:   28 GPSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTGRRKEIFLATKFGYE-KNPETGELSLNNEPDYIEKALDLS----LKRLGIDCIDLYYVHRFSGETPIEKIMGALKKCVEAGKIRYIGLSE------CSANTIRRAAAVYPVSAVQVEYSPFSLEIER 188          
The following BLAST results are available for this feature:
BLAST of FC930846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
YCCK_BACSU1.406e-1127.32Uncharacterized oxidoreductase yccK OS=Bacillus su... [more]
KCAB1_MUSPU1.406e-1127.01Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT1.836e-1126.47Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN1.836e-1126.47Voltage-gated potassium channel subunit beta-1 OS=... [more]
IOLS_BACSU4.090e-1125.50Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=... [more]
YAKC_SCHPO6.977e-1130.23Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34109F08EF PostHarvP1 Citrus clementina cDNA clone C34109F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930846 ID=FC930846; Name=FC930846; organism=Citrus clementina; type=EST; length=733bp
GACCATCAATCTTCTCATCAACAAACAACACCCTTTATCTCATACACAAT
GAGTGATTTCTTCGCAGCTGCTCCTGAACCCGCCACCCCTCTGGGTCGGT
ACCGGGTCCTCTCCTCAACAGCAGGAGTCCGCGTCTCCCCCCTCCAGCTC
GGTGCAATGTCCATCGGTGACGCCTGGAGCCAATTTATGGGCAGCATGAG
CAAAGAACAATCTTTCGCACTGCTCGACGCCTTCGTTGCCGCCGGTGGCA
ACTTCATCGACACAGCAAACAACTATCAGAACGAGCAGTCGGAGGCCTGG
ATTGGCGAGTGGATGGCCGCACGCAACAACCGCGACCAGATCGTGCTACC
CACCAAGTTCACAACCGATTATCGCAGCCACGTAGTCGGGAAGGGCAACT
CTCCTAACGCCTGCGGGAACCACAAGCGCAGCATGATCCTCAGCGTCCGT
GACTCTCTCCGCAAACTCCAAACCGATTTCATCGATGTCCTCTACCTCCA
CTGGTGGGACCACACCACCTCCATCGAGGAAATCATGGACTCCCTCCACA
TACTCGTCGAGCAGGGCAAGGTCATGTACCTCGGGATCTCGGACTCACCC
GCGTGGGTCGTTGCCGCGGCGAACACTTATGCGCGTGCGCACGGCAAAAC
GCCTTTCTCCATTTACCCAGGGCGGTGGAACGTGATGCGCCGCGACTTCG
AGCGCGATATCCTGCCCATGGCGCGGCATTTCG
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