FC930851

Overview
NameFC930851
Unique NameFC930851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 78/223 (34.98%), Postives = 111/223 (49.78%), Query Frame = 2
Query:    8 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 646
            G S  +G R  MED +    S  D      F V+DGHGGS+ ++Y   +L + ++   +F   + K AI + + + D      E       G+TA   ++    +Y  N GDSR V S  G+A PLS DHKP+   E +RI  AGG   W    RV G LA+SRA G+   K         Q V A P++   ++    E +VLA DG+WDV+ N++ V   R
Sbjct:   25 GSSCMQGWRVDMEDAHTHLLSLPDDPKCAFFAVYDGHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDEETKDDVSGTTAVVVLIKEGDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGG---WVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVR 244          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: P2C08_ARATH (Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 81/233 (34.76%), Postives = 125/233 (53.65%), Query Frame = 2
Query:   23 RGKRATMEDFYDI---KTSNVDGQAVCM-FGVFDGHGGSRAAEYLKEHLFENLLKH--PQFMTDTKL---AISETYQQTDVDFLESERDTYRDDGSTASTAVLVGNHLYVANVGDSRTVISKAG---------------KAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 646
            +G R TMED + +    + +  G   C  F ++DGHGG  AAE+ K+HL  N+L    P+ + D K+   AI E +++TD   L+        DG+TA    ++   ++VAN+GD++ V++++                KAI L+ +HK     ER RI+ +GGV+   G  R+ G L +SRAFG+R  K+F V A P+I   E+ E    ++L  DGLW+V    DAV   +
Sbjct:   81 KGARHTMEDVWVVLPDASLDFPGTLRCAHFAIYDGHGGRLAAEFAKKHLHLNVLSAGLPRELLDVKVAKKAILEGFRKTDELLLQKSVSGGWQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHKAIYPQERSRIQKSGGVISSNG--RLQGRLEVSRAFGDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQ 311          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 84/267 (31.46%), Postives = 136/267 (50.94%), Query Frame = 2
Query:    2 RCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESER-----------------------------------DTYRDDG-----------STASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 634
            R G +S +G R TMED +      +D +    FGV+DGHGG   +++  +HL   +LK+  + + D   ++ +++ + D + ++ +R                                   DT+ ++G           STA  A++  + L VAN GDSR V+S+ G+A  LS+DHKP+   E++RI NAGG ++ AG  RV G L ++RA G+  LK         Q V AEPE+  +++ E  E +VLA DG+WD + +++ V
Sbjct:   23 RYGLASMQGWRTTMEDAHTA-LPRLD-ECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFFRMD-EMMKGQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTWTEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIV-AG--RVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVV 283          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 75/224 (33.48%), Postives = 118/224 (52.68%), Query Frame = 2
Query:   26 GKRATMEDFY--------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF--------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 646
            G R TMED +        +    + +      +GVFDGHGG  AA+++  +L   +++   F  + + A+S  + QTD  F ++   ++    G+TA  A++VG  L VAN GD R V+   GKAI +S DHKP+   E+ RIE +GG V       + G L ++RA G+  ++          + AEPE+    + E  E L++  DG+WDV  +++AV  AR
Sbjct:   75 GSRHTMEDVFICSDNLMKEFGVESFEDGPSAFYGVFDGHGGKHAADFVCSNLARFIVEDEDFPREIEKALSSAFLQTDAAFADACSVNSSLASGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVY---DGYLNGQLNVARAIGDWHMEGMKACDGLGPLSAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFAR 295          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 81/234 (34.62%), Postives = 114/234 (48.72%), Query Frame = 2
Query:    2 RCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK------LAISETYQQTDVDFLESE---------RDTYRDDGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 628
            R G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K      L++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E ++LA DG+WDV+ NE+
Sbjct:   23 RYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEE 253          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 80/234 (34.19%), Postives = 114/234 (48.72%), Query Frame = 2
Query:    2 RCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL------AISETYQQTDVDFLESE---------RDTYRDDGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 628
            R G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K       ++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ ++G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E ++LA DG+WDV+ NE+
Sbjct:   23 RYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITNNEDFRAAGKSGSALEPSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRSGQVCFSTQDHKPCNPREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEE 253          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 82/237 (34.60%), Postives = 121/237 (51.05%), Query Frame = 2
Query:    2 RCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALART 649
            R G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R+
Sbjct:   23 RYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 82/237 (34.60%), Postives = 122/237 (51.48%), Query Frame = 2
Query:    2 RCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALART 649
            R G SS +G R  MED +        G ++   F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R+
Sbjct:   23 RYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 80/227 (35.24%), Postives = 128/227 (56.39%), Query Frame = 2
Query:   14 SSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL--AISETYQQTDVDFL--ESERDTYR----DD-----GSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 628
            S  +G R TMED + I   ++  Q + +FGVFDGHGG   A+++++H  E L K+  F  D K   A+ ET+ + D   L  E +++  +    DD     G TA+ A+   N LYVAN GDSR+V+ +      +S DHKP+  +E+ RIE AGG V      RV G L +SRA G+         R  +Q ++A P+I+ +E+++  + L++  DG+++ + ++D
Sbjct:   27 SEMQGWRNTMEDAH-IHVCDLQ-QDLSIFGVFDGHGGKEVAQFVEKHFIEELQKNKNFK-DQKFEDALRETFLKMDELLLTPEGQKEIIQIKGGDDEASYAGCTANVALFHKNVLYVANAGDSRSVLCRNNTNYDMSVDHKPDNYEEKSRIERAGGFV---SDGRVNGNLNLSRALGDLEYKRDSKLRSNEQLIIALPDIKKVELNQTDKFLLMGCDGVFETLDHQD 247          
BLAST of FC930851 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 82/237 (34.60%), Postives = 121/237 (51.05%), Query Frame = 2
Query:    2 RCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAVLVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALART 649
            R G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R+
Sbjct:   23 RYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
The following BLAST results are available for this feature:
BLAST of FC930851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
PP2C2_CAEEL3.142e-2634.98Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
P2C08_ARATH4.103e-2634.76Probable protein phosphatase 2C 8 OS=Arabidopsis t... [more]
P2C70_ORYSJ5.359e-2631.46Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
P2C57_ORYSJ6.999e-2633.48Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
PPM1B_HUMAN9.140e-2634.62Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
PPM1B_BOVIN1.559e-2534.19Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
PPM1A_BOVIN1.559e-2534.60Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
PPM1A_HUMAN2.036e-2534.60Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
PP2C4_PARTE2.036e-2535.24Probable protein phosphatase 2C 4 OS=Paramecium te... [more]
PPM1A_RAT2.659e-2534.60Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]

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Properties
Property NameValue
Genbank descriptionC34109G02EF PostHarvP1 Citrus clementina cDNA clone C34109G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930851 ID=FC930851; Name=FC930851; organism=Citrus clementina; type=EST; length=694bp
GAGATGTGGATACTCAAGTTTTAGGGGAAAGAGGGCAACTATGGAGGATT
TCTATGACATTAAAACTTCCAATGTTGATGGGCAAGCTGTCTGCATGTTT
GGAGTCTTTGATGGTCATGGTGGTTCCCGTGCGGCTGAGTATTTGAAGGA
GCACCTCTTTGAGAATCTCTTGAAGCATCCACAATTTATGACAGACACCA
AATTGGCTATAAGTGAAACATATCAACAGACTGATGTCGACTTTTTGGAA
TCTGAAAGAGATACTTACAGGGATGATGGTTCTACTGCTTCAACGGCTGT
ATTGGTTGGTAACCATCTATATGTTGCCAATGTCGGAGATTCTAGGACTG
TAATATCCAAGGCTGGTAAAGCAATTCCTCTTTCTGAGGATCATAAACCC
AACAGATGTGATGAGCGGAAGAGAATTGAAAATGCCGGAGGCGTTGTAAT
GTGGGCAGGCACTTGGAGAGTAGGAGGTGTGCTAGCTATGTCTCGTGCTT
TTGGTAACCGCATGCTGAAGCAATTTGTCGTTGCGGAACCTGAGATCCAG
GACCTTGAAGTAGATGAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGG
ACTATGGGATGTAGTACCCAATGAGGATGCTGTTGCACTTGCCCGAACAG
GGGAAAGACCTGAAATCGCAGCTCGGAAGTAACGGAGACTGCTT
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