FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 94/160 (58.75%), Postives = 122/160 (76.25%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ +N  AEV    AAL +NI AA+GLQDVL+TNLGPKGT+KML  GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDD++GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK   L+ LE+ K    +  E  ++IL  VART+L+T
Sbjct:    3 AIKAVNSKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLASGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVK----VTKEMKRKILLDVARTSLQT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 91/160 (56.88%), Postives = 121/160 (75.62%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            ++++ NP AEV    AAL +NI AA+GLQDVL+  LGPKG +KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQD ++GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GF++AK   L+ L++ K    +  E  +EIL  VART+L+T
Sbjct:    3 AIKIANPGAEVTRSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIK----VQKEMKREILLDVARTSLQT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 94/163 (57.67%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  172 LRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            L +LNP AE + ++ AL +NI+AA GLQDVLK+NLGP GT KMLV GAG IKLTKDG  LL EMQIQNPTA  IA+ A AQDD +GDGTTS  + +GEL+KQ+E  I EG+HP ++ DGF +AK   L FL+ FKT      E D+E+L  VA+T+L T  ++
Sbjct:    2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDF----EVDREVLLNVAKTSLSTKISS 160          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_PIG (T-complex protein 1 subunit zeta (Fragment) OS=Sus scrofa GN=CCT6 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 73/102 (71.57%), Postives = 89/102 (87.25%), Query Frame = 1
Query:  214 AALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVL 519
            AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDG TS V+ IGEL+KQ++  I EG+HPR++
Sbjct:    3 AALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGXTSNVLIIGELLKQADLYISEGLHPRII 104          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 60/146 (41.10%), Postives = 97/146 (66.44%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSY 654
            AL  NI AA+ L ++LK++LGP+G  KMLV   GDI +T DG T++KEM+IQ+P A ++   A AQD   GDGTTS V+  G L++++E+ +DE +HP ++++G+  A    L+ +++   PV + D+    +L+ +A TTL + +
Sbjct:   23 ALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDEAAVPVEVEDD---SVLRRIAETTLASKF 165          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            AL  NI AA+ + +++KT  GPKG  KMLV   GD+ +T DG T+L + +IQ+P A M+ + A +QD   GDGT   VI  GEL+K +E  +D+ +HP V++ G+ +A    L+ L++   P+ + +E   E+L+ VART+L
Sbjct:    8 ALRTNILAARAISEMIKTTYGPKGMDKMLVDALGDVTITNDGATILDKAEIQHPAAKMLVQVAKSQDSEVGDGTKRAVILAGELLKYAEELLDKNIHPTVIISGYRMAMEEALKILDQMAEPIDLNNE---ELLRKVARTSL 146          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  148 KRRNRTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            +R  +   + ++  +A+ +    A   NI AA+ + + +++ LGPKG  KMLV   GD+ +T DG T+LKEM I NPTA MI   A  Q+D +GDGTT+ V   GEL+K +E  +++ +HP  ++ GF +A     + ++     V   D  D+E+LK VA T++
Sbjct:    3 QRMQQGQPMIIMGEDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERV---DPDDEELLKKVAETSM 164          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            AL  NI A + +  +LKT  GPKG  KMLV   GDI +T +G T+L +M + +P A M+ + +  Q+D +GDGT +TVIF GEL+K++E+ +D  +HP ++V+G++ A R   + +E    PV      D E LK++A+T+L +
Sbjct:   31 ALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGDITITNNGATILDKMDVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEALRKASEVIESIAEPV---SYDDVEKLKLIAKTSLNS 171          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNH 663
            A  MNI AA+ + + +K+ LGPKG  KMLV   GD+ +T DG T+LKEM +++P A MI   A  QD+  GDGTT+ V+  GEL+K++E  +D+ +HP V+  G+ +A    ++ LE     +   D  D+E LK +A T +   ++ +
Sbjct:   24 AQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIAMDI---DVEDEETLKKIAATAITGKHSEY 169          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  MNI AA+ + + +++ LGPKG  KMLV   GD+ +T DG T+LKE+ +++P A MI   A  QD+  GDGTT+ V+  GEL+K++E  +D+ +HP ++ +G+  A    L+ L +   P+    + D EILK +A T +
Sbjct:   24 AQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIAIPI---SKDDDEILKKIATTAM 162          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPW_HUMAN1.787e-4558.75T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPW_MOUSE6.789e-4556.88T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPZ_SCHPO8.866e-4557.67T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPZ_PIG4.411e-3671.57T-complex protein 1 subunit zeta (Fragment) OS=Sus... [more]
THSA_AERPE2.194e-2741.10Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSB_DESMO1.422e-2641.55Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THS2_HALVO1.422e-2636.97Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSB_AERPE3.168e-2640.97Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
THSA_ARCFU3.168e-2639.60Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSB_ARCFU7.058e-2640.14Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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