FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  181 LNPNAEVLNKSAALHMNINA-------AKGLQDVLKTNLGPKGTIKMLVGGA-GDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            LNP+ ++ N+S       NA       A  + D++K+ LGPKG  K+L   + GDI +T DG T+LK + + N  A ++   +  QDD  GDGTTS  +F  EL++Q+E  ++  +HP+V++DG+ IA +  +  L              +  L+ +ARTTL
Sbjct:    3 LNPH-QIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDLENIARTTL 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 39/114 (34.21%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEK 570
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK++++++P   ++   A  QD+  GDGTTS VI   EL+K+++  + + +HP  +++G+ +A +  ++++ +
Sbjct:   25 NVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISE 138          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  223 HMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            + N+ A   + +V+K++LGP G  KMLV   GD  +T DG T+L  + +Q+P   ++   A  QD   GDGTTS VI   EL+K++   +   +HP  ++ GF +A R  ++F+ +  +  V  D   KE L  +A+T++
Sbjct:   27 NQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSV--DTLGKETLINIAKTSM 164          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            NI AA+ + D ++T+LGPKG  KM+    G+I ++ DG T+LK M + +P A M+   + AQD  +GDGTTS  I  G L+  +E+ +++G+HP ++ + F+ A   + + L +    + +    DKE L   A T+L
Sbjct:   29 NILAARAVSDAIRTSLGPKGMDKMIKTKNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLEMSHKISL---DDKEALIRAASTSL 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 45/143 (31.47%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  214 AALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A    N+ AA  + +++K++ GP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  ++  DE  ++ L   A+T++
Sbjct:   16 AVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIN--ENLIINTDELGRDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 48/165 (29.09%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  166 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            MS +VL  + + ++ +     N+ A   + +++KT+ GP G  KML+   G I +T DG T+L+++ I++P A ++ + +  QD   GDGTT+ VI   EL+K++   +   +HP V++ GF +A    ++++   +T  V  +   K+ +  +A+T++ +   N
Sbjct:    1 MSNKVLMIDGDRISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYIN--ETLAVKVETLPKDFIVNIAKTSMSSKTIN 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 46/137 (33.58%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  166 MSLRVLNPNAEVLNKSA--ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEK 570
            MS+   NP+     +S       N+ A + + +++KT+LGP G  KMLV   GD+ +T DG T+L+ +++++P A ++   A  QD   GDGTTS VI   EL+K++   +   +HP  ++ G+ +A R + +++E+
Sbjct:    1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEE 137          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 46/138 (33.33%), Postives = 84/138 (60.87%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++    + +HP  ++ G+ +A +  ++++   +  +V  DE  ++ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYIN--ENLIVNTDELGRDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 47/139 (33.81%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPV-VMGDEPDKEILKMVARTTL 642
            +I AA+ +  ++KT+LGP+G  K+L+   G+I +T DG T+L +M++ N  A ++ + + +QDD  GDGTT  V+    L+ Q+   I +G+HP  + +GF+ A +  +  LE+    +    DE  ++ L   A+T+L
Sbjct:   50 HILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSL 188          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 50/144 (34.72%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            N+ AA    + +KT+LGP G  KMLV   GD+ +T DG T+LK + +++P A ++ + A  QD+  GDGTTS VI    L+K ++  I   +HP  +++G+ +A R   +++++     V  ++  K  L  VART + +   N
Sbjct:   18 NVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQEHMAYDV--NKLGKAGLINVARTAMSSKLIN 159          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPB_SCHPO6.398e-1934.57Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPA_CAEEL6.398e-1934.21T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_YEAST8.357e-1935.00T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPD_DEBHA1.091e-1836.23T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPA2_MOUSE1.091e-1831.47T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPA_DICDI1.425e-1829.09T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_ARATH1.425e-1833.58T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_MACFA2.431e-1833.33T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPE_YEAST3.176e-1833.81T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPA_SCHMA3.176e-1834.72T-complex protein 1 subunit alpha OS=Schistosoma m... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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