FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI A K + DV++T LGP+  +KML+   G I +T DGN +L+E+ +Q+P A  +   A  QD+  GDGTTS ++  GE++  +E  + + +HP V++  +  A    +  L+   +  +  D  DK  +  V +  + T +   W
Sbjct:   27 NIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLS--IQLDVKDKAKMADVVKACVGTKFIGKW 170          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  157 NRTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEK 570
            N+ +S   +    E  +  +A+  N  A   + + +KT+ GP G  KM V  AG++ +T DG T+L+ M I +P A ++   A  QD   GDGTTS V+    L+++  + I  G+HP V+V G+++A    +QF++K
Sbjct:    2 NKEISTADILSGGESYSGISAVEKNAKAMMKVYNAIKTSFGPLGLDKMCVDSAGEVSITNDGATILQNMLIDDPAAKILVDLATQQDHEVGDGTTSVVLIAVSLIEKGAKLIASGVHPSVVVSGYKMAFNECVQFIKK 139          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 52/169 (30.77%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  163 TMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK-EILKMVARTTLRTS-YTNH 663
            ++ + +L    +     + +  NINA + + D++KT LGP+G  K L+    D+ +T DG T++  + I +P A ++   A +QDD  GDGTTS V+  GEL+ +++  +++G+ P +++DGF  A    +  L +        +E +K  IL   A+T L +   +NH
Sbjct:    6 SLPIVLLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDK-LIYTERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNH 173          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  178 VLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAG--DIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            +LN NA       A   +   A  + D++KT LGPKG  K+L+  +   ++ +T DG T+L ++ I NP A ++   +  QDD  GDGTTS  +  GEL+++ ER + + +HP+ ++ G+ +A       L+             +E L  +ARTTL
Sbjct:   10 ILNQNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTTL 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 48/151 (31.79%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  190 NAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            + E ++     + N+ A   + +V+K++LGP G  KMLV   GD+ +T DG T+L  + +++P   ++   A  QD   GDGTTS VI   EL++++   +   +HP  ++ G+ +A R  ++F+    +  V  D   KE L  VA+T++
Sbjct:   13 SGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSV--DSLGKESLINVAKTSM 161          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 44/141 (31.21%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD-KEILKMVARTTLRT 648
            NINA   +QD ++T LGP G  K++V   G++ ++ DG T++K + I +P A  +   A AQD   GDGTTS V+F GEL++++   +++G+   +++ G+  A +  +  +++    + + DE   +++L   A T + +
Sbjct:   29 NINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNS 169          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 43/139 (30.94%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD-KEILKMVARTTL 642
            NI+A + + + ++T LGP+G  K++V G G   ++ DG T+LK + + +P A  +   A +QD   GDGTTS  +   E +KQ +  ++EG+HP++++  F  A +  +  +++    V   D+ + +++L+  A T L
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTAL 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 43/139 (30.94%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD-KEILKMVARTTL 642
            NI+A + + + ++T LGP+G  K++V G G   ++ DG T+LK + + +P A  +   A +QD   GDGTTS  +   E +KQ +  ++EG+HP++++  F  A +  +  +++    V   D+ + +++L+  A T L
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTAL 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 43/149 (28.86%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD-KEILKMVARTTLRTSYTNHWQI 672
            NI+A + + + ++T LGP+G  K++V G G   ++ DG T+LK + + +P A  +   A +QD   GDGTTS  +   E +KQ +  ++EG+HP++++  F  A +  +  +++    V   D+ + +++L+  A T L +   +  ++
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKV 173          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 43/139 (30.94%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD-KEILKMVARTTL 642
            NI+A + + + ++T LGP+G  K++V G G   ++ DG T+LK + + +P A  +   A +QD   GDGTTS  +   E +KQ +  ++EG+HP++++  F  A +  +  +++    V   D+ + +++L+  A T L
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTAL 163          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPG_DROME5.417e-1832.19T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPA_ENCCU7.074e-1834.06T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
TCPH_PLAF79.239e-1830.77T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPB_DICDI9.239e-1832.48T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPA_SCHPO1.207e-1731.79T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPH_SCHPO2.058e-1731.21Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_PONAB4.585e-1730.94T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN4.585e-1730.94T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_MOUSE7.822e-1728.86T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPH_BOVIN7.822e-1730.94T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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