FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH603_FRASC (60 kDa chaperonin 3 OS=Frankia sp. (strain CcI3) GN=groL3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  220 LHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIM----IARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPV 585
            L   +NA   L D +K  LGPKG   ++    G   +T DG T+ +E+Q++NP A M    +   A   +  +GDGTT+  +    L+++    +D G +P  L +G E A  A L+  EK++  V
Sbjct:   15 LEAGVNA---LADAVKVTLGPKGRNAVIEKLTGPPTITNDGVTIAREIQLRNPFANMGAQLVKEVATKTNGTAGDGTTTATVLAQALVREGLHAVDGGANPMFLKNGIEAAVAALLEEFEKYRGEV 137          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  250 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQ----NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 600
            L + +K  LGPKG   ++    G  ++TKDG T+ KE++++    N  A M+   A   +D++GDGTT+  +    ++++  + +  GM+P  L  G EIA  A ++ ++K   PV    E
Sbjct:   23 LANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEVELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIEIAVAAVVKDIQKRAKPVASSAE 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 39/149 (26.17%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  151 RRNRTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPT----AIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPV 585
            R+NR + +  +          +A+    N    L D++   LGPKG   +L    G  K+  DG T+ KE+++++P     A ++ + A   +D++GDGTT++V+    L+ +  + +  G +P ++  G E   +A +  L+K    V
Sbjct:   39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEV 187          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  250 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQ----NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 600
            L + +K  LGPKG   ++    G  ++TKDG T+ KE++++    N  A M+   A   +D++GDGTT+  +    ++++  + +  GM+P  L  G EIA  A ++ L K   PV    E
Sbjct:   23 LANAVKVTLGPKGRNVLIERSFGAARITKDGVTVAKEIELEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIEIAVAAVIKDLVKRAKPVASSAE 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  250 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQI----QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 600
            L + +K  LGPKG   ++    G  ++TKDG T+ KE+++    +N  A M+   A   +D++GDGTT+  +    ++++  + +  GM+P  L  G EIA +A ++ ++K   PV    E
Sbjct:   23 LANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEIELDDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLRRGIEIAVQAVVKDIQKRARPVASSAE 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH60_PARL1 (60 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  250 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQ----NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 600
            L D +K  LGPKG   ++    G  + TKDG T+ KE++++    N  A M+   A   +D +GDGTT+  +    ++++  + +  GM+P  L  G EIA R  ++ + K    V   DE
Sbjct:   22 LADAVKVTLGPKGRNVVIEKSFGSPRTTKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDTAGDGTTTATVLTQAIVREGAKSVAAGMNPMDLKRGIEIAVRTAVEDITKRSKKVKSNDE 142          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH601_CHRVO (60 kDa chaperonin 1 OS=Chromobacterium violaceum GN=groL1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 38/127 (29.92%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  232 INAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPT----AIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 600
            +N    L D +K  LGPKG   +L    G   +TKDG ++ KE+++++P     A M+   A    D++GDGTT+  +    ++++  + +  GM+P  L  G + A  A ++ L+    PV    E
Sbjct:   17 VNGVNVLADAVKVTLGPKGRNVLLARSFGAPHITKDGVSVAKEIELKDPFENMGAQMVKEVASKTADVAGDGTTTATVLAQAIVQEGMKYVASGMNPMDLKRGIDKAVHAVIKELQTLSKPVTNSKE 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 43/139 (30.94%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  196 EVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQ----NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 600
            EV   S A    +     L D +K  LGPKG   ++    G  ++TKDG T+ KE++++    N  A M+   A    D++GDGTT+  +    ++K+  + +  GM+P  L  G + A  A +Q L+     V   DE
Sbjct:    5 EVKFHSDAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTSDLAGDGTTTATVLAQAIVKEGAKAVASGMNPMDLKRGIDKAVEAIVQELKTNARKVTRNDE 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH60_NITEC (60 kDa chaperonin OS=Nitrosomonas eutropha (strain C91) GN=groL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  196 EVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQI----QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTP 582
            EV    AA    I     L D +K  LGPKG   +L    G   +TKDG ++ KE+++    +N  A M+   A    D +GDGTT+  +    ++K+  R +  GM+P  L  G E A  A ++ L+K   P
Sbjct:    5 EVRFGDAARSAVITGVNVLADAVKVTLGPKGRNVVLERSYGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDTAGDGTTTATVLAQAIVKEGMRYVAAGMNPMDLKRGIEKAVSAAVEELKKLSKP 137          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  250 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQ----NPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE----------PDKEILKMVA 630
            L D +K  LGPKG   +L    G  ++TKDG T+ KE++++    N  A M+   A   +DI+GDGTT+  +    ++++  + +  GM+P  L  G ++A    + +L K    +   +E           +KEI +M+A
Sbjct:   23 LADAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVQEGAKAVAAGMNPMDLKRGVDLAVAEVVDYLAKAAKKIKTSEEVAQVGTISANGEKEIGQMIA 163          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
CH603_FRASC2.204e-1132.5460 kDa chaperonin 3 OS=Frankia sp. (strain CcI3) G... [more]
CH601_RHOPA2.204e-1131.4060 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
RUBB_PEA2.879e-1126.17RuBisCO large subunit-binding protein subunit beta... [more]
CH602_RHOPB2.879e-1132.2360 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOP22.879e-1131.4060 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_PARL13.760e-1132.2360 kDa chaperonin OS=Parvibaculum lavamentivorans ... [more]
CH601_CHRVO3.760e-1129.9260 kDa chaperonin 1 OS=Chromobacterium violaceum G... [more]
CH602_RHILO4.910e-1130.9460 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH60_NITEC8.376e-1133.0860 kDa chaperonin OS=Nitrosomonas eutropha (strain... [more]
CH601_MESSB8.376e-1129.7960 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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