FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.218e-26
Identity = 60/165 (36.36%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  148 KRRNRTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            ++R +   + ++  +A+ +    A   NI+AA+ + D +++ LGPKG  KMLV   GD+ +T DG T+L+EM I NPTA MI   A  Q+D +GDGTT+ V   GEL+K +E  ++  +HP  ++ G+ +A     Q  E+     V  D  DK++++ VA T++
Sbjct:    4 QQRMQGQPMIIMGDDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAE---QAREEVDNVAVDVDPDDKDLIRSVAETSM 165          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 58/138 (42.03%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            NI AAK + D ++T LGPKG  KMLV   GDI ++ DG T+LKEM +++PTA MI   + AQD   GDGTT+ V+  GEL+KQ+E  +D+G+HP V+ +G+ +A     + +++     +     D   L+ +A T L
Sbjct:   27 NIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE-----IAEKSTDDATLRKIALTAL 159          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L EM IQ+P A M+   A  QD  +GDGTT+ V+  GEL++++E  +D+ +HP +++ G+ +A     + L+     V   D  D+EILK  A T +
Sbjct:   24 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIARDV---DVEDREILKKAAMTAI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 58/142 (40.85%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L EM IQ+P A M+   A  QD  +GDGTT+ V+  GEL++++E  +D+ +HP +++ G+ +A     + L++    V   D  D+EILK  A T++
Sbjct:   24 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAKDV---DVEDREILKKAAVTSI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 58/142 (40.85%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L EM IQ+P A M+   A  QD  +GDGTT+ V+  GEL++++E  +D+ +HP +++ G+ +A     + L++    V   D  D+EILK  A T++
Sbjct:   24 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAKDV---DVEDREILKKAAVTSI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 58/143 (40.56%), Postives = 93/143 (65.03%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLR 645
            AL  NI AAK L ++L+++LGPKG  KML+   GD+ +T DG T++K+M+IQ+P A ++   A AQD   GDGTTS V+  G L++++E  +D+ +HP ++++G++ A    L+ L +  T + +     K++   VAR TLR
Sbjct:   20 ALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRIDI-----KDLNSSVARDTLR 157          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 57/149 (38.26%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGD---EPDKEILKMVARTTLRTSY 654
            AL  NI AAK L ++L+++LGPKG  KML+   GD+ +T DG T++K+M+IQ+P A ++   A AQD   GDGTTS V+  G L++++E  +D+ +HP ++++G++ A    L+ L +  T + + D      ++ L+ +A TTL + +
Sbjct:   20 ALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRIDIRDLNSSVARDTLRKIAFTTLASKF 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 58/142 (40.85%), Postives = 92/142 (64.79%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            AL +NI A K +++ LKT  GP+G  KMLV   GDI +T DG T+L +M +Q+P A ++ + A  QD+ + DGT + VIF GEL+K++E  + + +HP ++V G++ A+   ++ +E+  T V +    D EIL+ VA T+L
Sbjct:   31 ALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEISTKVSVN---DTEILRKVALTSL 169          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  MNI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L EM IQ+P A M+   A  QD  +GDGTT+ V+  GEL+K++E  +D+ +HP +++ G+ +A +   + L+     V   DE   E+L   A T +
Sbjct:   24 AQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAKEVKPDDE---EVLLKAAMTAI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  MNI A + + + ++T LGPKG  KMLV   GDI +T DG T+LKEM +++P A M+   A  Q+   GDGTT+ V+  GEL++++E  +D+ +HP V+++G+E+A+   ++ L+     V      D E+LK +A T++
Sbjct:   23 AQRMNILAGRIIAETVRTTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEELKSIAKEV---KPEDTEMLKKIAMTSI 161          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
THSB_HALSA9.218e-2636.36Thermosome subunit beta OS=Halobacterium salinariu... [more]
THSA_THEAC2.054e-2542.03Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSB_THEK82.682e-2540.85Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_THEK12.682e-2540.85Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO2.682e-2540.85Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_SULSO4.575e-2540.56Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH5.975e-2538.26Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THSB_SULAC7.803e-2540.85Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THS_PYRHO1.019e-2440.85Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_METJA2.270e-2439.44Thermosome subunit OS=Methanocaldococcus jannaschi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
back to top