FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  MNI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L EM IQ+P A M+   A  QD  +GDGTT+ V+  GEL+K++E  +D+ +HP +++ G+ +A     + L+     V   DE   E+L   A T +
Sbjct:   24 AQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAKEVKPDDE---EVLLKAAMTAI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L EM IQ+P A M+   A  QD  +GDGTT+ V+  GEL+K++E  +D+ +HP +++ G+ +A     + LE     V      D E LK  A T++
Sbjct:   24 AQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAKEV---SPDDVETLKKAAVTSI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 53/146 (36.30%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++  +E  +++ MHP V++  + +A    +  L+K  TPV   D  ++E++  +  +++ T   + W
Sbjct:   26 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPV---DVNNREMMLSIINSSITTKVISRW 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 57/144 (39.58%), Postives = 91/144 (63.19%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            AL +NI A K +++ LK+  GP+G  KMLV   GDI +T DG T+L +M +Q+P A ++ + A  QD+ + DGT + VI  GEL+K++E  + + +HP ++V GF+ A+   L+ +E+    V +    D +ILK VA T+L +
Sbjct:   31 ALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQKVSVN---DMDILKKVAMTSLNS 171          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 55/149 (36.91%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGD---EPDKEILKMVARTTLRTSY 654
            AL  NI AA  L ++LK++LGP+G  KML+   GD+ +T DG T++KEM+IQ+P A ++   A AQD   GDGTTS V+  G L+ ++E  +++ +HP +++DG++ A    L+ +++    + + D      K  LK +  TT+ + +
Sbjct:   20 ALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKIDVNDLSSPTAKAQLKKIVSTTMSSKF 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 56/146 (38.36%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI+AAK + D ++T+LGPKG  KM+  G GD+ +T DG T+LK+MQ+ +P A M+   + AQD  +GDGTTS VI  G L+    + + +G+HP ++ + F+ A    L+ L     PV +    D+E L   A T+L +   + +
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLS---DRETLLNSATTSLNSKVVSQY 179          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 56/146 (38.36%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI+AAK + D ++T+LGPKG  KM+  G GD+ +T DG T+LK+MQ+ +P A M+   + AQD  +GDGTTS VI  G L+    + + +G+HP ++ + F+ A    L+ L     PV +    D+E L   A T+L +   + +
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLS---DRETLLNSATTSLNSKVVSQY 179          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 57/155 (36.77%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  178 VLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            VL  N +      A  MNI A + + + +++ LGPKG  KMLV   GDI +T DG T+LKEM +++P A M+   A  Q+   GDGTT+ V+  GEL++++E  +D+ +HP +++ G+++A +   + L++    V      DKEIL  +A T++
Sbjct:    9 VLPENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIAMDV---KADDKEILHKIAMTSI 160          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 52/146 (35.62%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++  +E  +++ MHP V++  + +A    +  L+K  TPV   D  +++++  +  +++ T   + W
Sbjct:   26 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMVSTLKKISTPV---DVNNRDMMLNIINSSITTKVISRW 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI+AAK + D ++T+LGPKG  KM+  G GD+ +T DG T+LK+MQ+ +P A M+   + AQD  +GDGTTS VI  G L+    + + +G+HP ++ + F+ A    ++ L     PV +    D+E L   A T+L +   + +
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS---DRETLLNSATTSLNSKVASQY 179          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
THS_PYRAB2.965e-2440.85Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THS_DESSY5.058e-2440.85Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
TCPG_MOUSE5.058e-2436.30T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
THSB_SULTO8.628e-2439.58Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSA_SULAC8.628e-2436.91Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
TCPD_RAT1.127e-2338.36T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE1.127e-2338.36T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THS_METTL1.922e-2336.77Thermosome subunit OS=Methanococcus thermolithotro... [more]
TCPG_RAT1.922e-2335.62T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPD_PONAB1.922e-2337.67T-complex protein 1 subunit delta OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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