FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI+AAK + D ++T+LGPKG  KM+  G GD+ +T DG T+LK+MQ+ +P A M+   + AQD  +GDGTTS VI  G L+    + + +G+HP ++ + F+ A    ++ L     PV +    D+E L   A T+L +   + +
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS---DRETLLNSATTSLNSKVVSQY 179          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  MNI AA+ + + ++T LGP G  KMLV   GD+ +T DG T+L+EM I++P A M+   A  Q+D  GDGTT+ V+  GEL+ ++E  + + +HP V+  G+ +A     + LE+    +   D  D+E LK +A+T +
Sbjct:   26 AQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAEEI---DPDDEETLKKIAKTAM 164          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 54/142 (38.03%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            AL  NI A K +++ LK+  GP+G  KMLV   GDI +T DG T+L +M +Q+PT  ++ + A  QD+ + DGT + VI  GEL K++E  + + +HP ++V G++ A+   L+ +++   PV +    D ++L+ VA T+L
Sbjct:   30 ALRANIAAVKAIEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQEIAQPVTIN---DTDVLRKVALTSL 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 53/142 (37.32%), Postives = 88/142 (61.97%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L ++ +Q+P A M+   A  QD  +GDGTT+ V+  GEL++++E  +D+ +HP +++ G+ +A     + L++    V   D  D+E L  +A T++
Sbjct:   24 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRV---DPDDEETLLKIAATSI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 53/149 (35.57%), Postives = 94/149 (63.09%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPV---VMGDEPDKEILKMVARTTLRTSY 654
            AL  NI AA  L ++LK++LGP+G  KML+   GD+ +T DG T++KEM+IQ+P A ++   A AQD   GDGTTS V+  G L+ +++  +D+ +HP ++++G++ A   +L+ +++  T +    +     ++ LK +  TT+ + +
Sbjct:   21 ALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKF 169          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 53/142 (37.32%), Postives = 88/142 (61.97%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L ++ +Q+P A M+   A  QD  +GDGTT+ V+  GEL++++E  +D+ +HP +++ G+ +A     + L++    V   D  D+E L  +A T++
Sbjct:   24 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRV---DPDDEETLLKIAATSI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 52/146 (35.62%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGP+  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++  +E+ +++ MHP V++  +  A    +  L++  TPV   D  D+E++  +  + + T     W
Sbjct:   25 NINAAKTIADIIRTCLGPRAMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEQFLEQQMHPTVIISAYRKALDDMVNTLKEISTPV---DTNDRELMLKIINSAINTKAIKLW 167          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            AL  +I AAK + + ++T+LGP G  KM+V   GD+ +T DG T+L  M + +  A ++   + +QDD  GDGTT  V+  G L++++E+ +D G+HP  + DG+E A R  ++ L+K    V++ D  D E L   A+TTL +   N
Sbjct:   33 ALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLV-DIKDTEPLIQTAKTTLGSKVVN 179          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            AL  +I AAK + + ++T+LGP G  KM+V   GD+ +T DG T+L  M + +  A ++   + +QDD  GDGTT  V+  G L++++E+ +D G+HP  + DG+E A R  ++ L+K    V++ D  D E L   A+TTL +   N
Sbjct:   33 ALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLV-DIKDTEPLIQTAKTTLGSKVVN 179          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            AL  +I AAK + + ++T+LGP G  KM+V   GD+ +T DG T+L  M + +  A ++   + +QDD  GDGTT  V+  G L++++E+ +D G+HP  + DG+E A R  ++ L+K    V++ D  D E L   A+TTL +   N
Sbjct:   33 ALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLV-DIKDTEPLIQTAKTTLGSKVVN 179          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPD_HUMAN1.922e-2337.67T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THS_METKA4.282e-2338.73Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSB_SULSO4.282e-2338.03Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
THSA_THEK14.282e-2337.32Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_SULTO4.282e-2335.57Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_PYRKO4.282e-2337.32Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPG_XENLA4.282e-2335.62T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPE_PONAB4.282e-2337.84T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA4.282e-2337.84T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN4.282e-2337.84T-complex protein 1 subunit epsilon OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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