FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 53/142 (37.32%), Postives = 88/142 (61.97%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI AA+ + + ++T LGPKG  KMLV   GDI +T DG T+L ++ +Q+P A M+   A  QD  +GDGTT+ V+  GEL++++E  +D+ +HP +++ G+ +A     + LE+    V   +  D+E L  +A T++
Sbjct:   24 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIKV---NPDDEETLLRIAMTSI 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  +NI A K L + ++T LGPKG  KMLV   GDI +T DG T+L+EM I +P A M+   A  Q+D  GDGTT+ VI  GEL+K++E+ I+ G+HP ++  G+  A     + LE+     +  +  D++ L  VA T +
Sbjct:   23 AQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEE-----ISMEASDRDTLMKVAITAM 159          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 54/146 (36.99%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI+AAK + D ++T+LGPKG  KM+  G GD+ +T DG T+LK+MQ+ +P A M+   + AQD  +GDGTTS VI  G L+    + + +G+HP ++ + F+ A    ++ L     P  +    D+E L   A T+L +   + +
Sbjct:   40 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEELS---DRETLLNSAATSLNSKVVSQY 182          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 52/146 (35.62%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++  +E  +++ MHP V++  +  A    +  L+K   PV   D  D +++  +  +++ T   + W
Sbjct:   26 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMVEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPV---DINDSDMMLNIINSSITTKAISRW 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 52/146 (35.62%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++  +E  +++ MHP V++  +  A    +  L+K   PV   D  D +++  +  +++ T   + W
Sbjct:   26 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPV---DISDSDMMLNIINSSITTKAISRW 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            AL  +I AAK + + ++T+LGP G  KM+V   GD+ +T DG T+L  M + +  A ++   + +QDD  GDGTT  V+  G L++++E+ +D G+HP  + DG+E A R  +Q L+K    V++ D  + E L   A+TTL +   N
Sbjct:   33 ALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLV-DINNPEPLIQTAKTTLGSKVIN 179          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 1
Query:  223 HMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            + NI+AAK + D ++T+LGPKG  KM+    GD+ +T DG T+LK+MQ+ +P+A M+   + AQD  +GDGTTS V+  G L+    R +  G+HP ++ + F+ A    ++ L     PV +G   D+E L   A T+L
Sbjct:   32 YSNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLG---DRETLLNSATTSL 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A  MNI A K L + ++T LGPKG  KMLV   GDI +T DG T+LKEM I++P A M+   A  Q+D  GDGTT+ VI  GEL+K++E  ++  +HP ++  G+  A     + L+      +  D  D++ L  VA T +
Sbjct:   23 AQRMNILAGKILAETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDD-----IAIDASDRDTLMKVAMTAM 159          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/163 (33.74%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  178 VLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            +LN NA+      A   NI AA+ + D+++T LGPK  +KML+   G I LT DGN +L+E+ + +P A  +   A AQD+  GDGTTS +I  GE++   E  ++  +HP V+V  +  A    ++  E +  P+ + +E D   L+ +  + + T +++ W
Sbjct:    9 ILNQNAKREQGRKAQTANIKAARAVSDIVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEEIVRLTESYGEPIDIENEND---LQKIVSSCIGTKFSSKW 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            AL  +I AAK + + ++T+LGP G  KM+V   GD+ +T DG T+L  M + +  A ++   + +QDD  GDGTT  V+  G L++++E+ +D G+HP  + DG+E A R  +Q L+K    V++ D  + E L   A+TTL +   N
Sbjct:   33 ALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLV-DINNPEPLIQTAKTTLGSKVVN 179          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
THSA_THEK85.592e-2337.32Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_METTH7.304e-2340.85Thermosome subunit alpha OS=Methanobacterium therm... [more]
TCPD_BOVIN9.539e-2336.99T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPG_PONAB1.246e-2235.62T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_HUMAN1.246e-2235.62T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPE_MOUSE1.246e-2237.84T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPD_TAKRU1.246e-2239.29T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
THSB_METTH1.627e-2240.85Thermosome subunit beta OS=Methanobacterium thermo... [more]
TCPG_OXYGR1.627e-2233.74T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPE_RAT1.627e-2237.84T-complex protein 1 subunit epsilon OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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