FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++  +E  +++ MHP V++  +  A    +  L+K   PV   D  +++ +  +  +++ T   + W
Sbjct:   26 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPV---DTSNRDTMLNIINSSITTKVISRW 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            NINAAK + D ++T+LGP+G  KM+    G++ +T DG T+LK+M + +P A M+   + AQD  +GDGTTS V+  G L+K  E+ +  G+HP  + D F+      +  L +  TP+ +    D+E L   A T+L +
Sbjct:   30 NINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIEL---TDRESLVKSASTSLNS 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 53/142 (37.32%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            AL  NI A K +++ LK+  GP+G  KM V   GDI +T DG T+L +M +Q+PT  ++ + A  QD+ + DGT + VI  GEL K++E  + + +HP ++V G++ A+   L+ ++    PV +    D ++L+ VA T+L
Sbjct:   30 ALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQPVSIN---DTDVLRKVALTSL 168          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 59/165 (35.76%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  148 KRRNRTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            +R  +   + +L  +++  +   A  MNI A K + + ++T LGPKG  KMLV   G + +T DG T+LKEM I +P A MI   +  Q+D  GDGTT+ VI  GEL+ Q+E  +D  +H   +  G+  A     + LE     V    E D+E L  +A T +
Sbjct:    3 QRMQQGQPMIILGEDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNAIEVT---EDDRETLTKIAATAM 164          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV-MGDEPDKEILKMVARTTLRTSYTNHWQ 669
            ++ +L    +     A +  NINA + + +++KT LGP+G  K++ G  G   ++ DG T+L  + I +P A  +   A AQDD  GDGTTS  +  GEL+K+S+  I+EGMHP+++  G++ A +  L FL++    V    D   +E+L   A+T+L +    H++
Sbjct:    5 TILLLKDGTDTSQGKAQIISNINAVQSIVEIVKTTLGPRGMDKLIEGNRG-ATISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEALKLALTFLQENSYSVADKSDGEKREMLLKCAQTSLNSKLLAHYK 171          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 54/146 (36.99%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI AA+ + D ++T+LGPKG  KM+    G+I ++ DG+T+LK+M I +P A M+   + AQD  +GDGTTS VI  G L+  +ER +++G+HP ++ D F+ A + ++  L +    V +    D+E L   A T+L +   + +
Sbjct:   24 NIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLS---DREQLVRAASTSLSSKIVSQY 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 54/138 (39.13%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            NI AA+ + D ++T+LGPKG  KM+    GDI ++ DG+T+LK+M I +P A M+   + AQD  +GDGTTS VI  G L+  +E+ +++G+HP ++ + F+ A   +++ L    T + +    DKE L   A T+L
Sbjct:   26 NIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTKISL---DDKEALVRAASTSL 160          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 54/146 (36.99%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI AA+ + D ++T+LGPKG  KM+    G+I ++ DG+T+LK+M I +P A M+   + AQD  +GDGTTS VI  G L+  ++R +++G+HP ++ + F+ A R +++ L +   PV + D  D   L   A T+L +   + +
Sbjct:   25 NIVAARAVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVDVSAAQDSEAGDGTTSVVILTGALLGAADRLLNKGIHPTIIAESFQKAARRSVETLLEICHPVSLDDRED---LIRAASTSLSSKIVSQY 167          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 51/144 (35.42%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            A+  NI AA  + + ++++LGP+G  KMLV   GDI +T DG T+LKEM +++P A M+   +  QD   GDGTT+ VI  G L++Q++  I++ +HP V+ +G+ +A     + +++  T +      +K +L  +A+T+L +
Sbjct:   22 AMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKI---GADEKALLLKMAQTSLNS 162          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NINAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  G GTTS +I  GE++  +E  +++ MHP V++  +  A    +  L+K   PV   D  D +++  +  +++ T   + W
Sbjct:   26 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPV---DINDSDMMLNIINSSITTKAISRW 168          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPG_BOVIN2.125e-2234.93T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPD_AEDTR2.125e-2237.86T-complex protein 1 subunit delta OS=Aedes triseri... [more]
THSB_SULSH3.625e-2237.32Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THS1_HALVO3.625e-2235.76Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
TCPH_TETPY4.734e-2233.93T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPD_YEAST4.734e-2236.99T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPD_KLULA4.734e-2239.13T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPD_CANGA4.734e-2236.99T-complex protein 1 subunit delta OS=Candida glabr... [more]
THSB_THEAC1.055e-2135.42Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
TCPG_MACFA1.055e-2134.93T-complex protein 1 subunit gamma OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
back to top