FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            NI A K +  +L+++LGPKG  KML G  GDI +T DG T+L++M + N  A ++   + +QD   GDGTT  V+  G L++Q+ER +D G+HP  + +G+E+A R  ++ LE+        D  + E L     TTL +   N
Sbjct:   33 NIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEF-DVNNYEPLVQTCMTTLSSKIVN 175          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  172 LRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            L VL+ +++  +   A  MNI A K + + ++T LGPKG  KMLV  +G++ +T DG T+LKEM I++P A MI   A  Q+   GDGTT++V+  GEL+ ++E  +++ +H   L  G+  A     + L+     V      D E L+ +A T +
Sbjct:   10 LIVLSEDSQRTSGEDAQSMNITAGKAVAESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKAKELLDDAAIDV---SADDTETLEKIAATAM 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 48/146 (32.88%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI AA+ + D ++T+LGPKG  KM+    G + ++ DGNT+L+ M + +P A M+   + +QD ++GDGTTS VI  G L+  +++ + +G+HP ++ + F+ A +   + +     P+   D  D+E L   A T+L +   + +
Sbjct:   24 NILAARAVADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDMSKPI---DLSDRETLIRAASTSLNSKIVSQF 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 54/150 (36.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKF--KTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            A+  +I AA+ + + L+T+LGP+G  KMLV   GD+ +T DG T++++M +Q+  A ++   + +QD   GDGTT  V+  G L++++E+ ID G+HP  + DGF++A +  L+ L+    K PV      ++E L   A+T+L +   N
Sbjct:   34 AVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFPV-----ENRERLVETAQTSLGSKIVN 178          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 50/140 (35.71%), Postives = 85/140 (60.71%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            NI AAK + D ++T+LGP+G  KM+  G GD+ +T DG T+L +M + +PTA M+   + AQD  +GDGTT+ V+  G L+  ++  + +G+HP  + + F+ A     + L++  +PV   D  +  +L  +A T+L +
Sbjct:   36 NIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPV---DLSNDALLNKMATTSLNS 172          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 53/142 (37.32%), Postives = 90/142 (63.38%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSY 654
            NI  AK L ++LK++LGPKG  KMLV G  D+ +T DG T++K M++Q+PTA ++  TA   D   GDGTTS V+  G L++++E  +++ +HP V+++G+  A  ++L+ L+     +      D++I+  +  TTL + +
Sbjct:   21 NIAVAKILLEMLKSSLGPKGLDKMLVEGQ-DVTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADKI---SPEDRKIVHDLVYTTLSSKF 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 54/142 (38.03%), Postives = 90/142 (63.38%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSY 654
            NI  AK L ++LK++LGPKG  KMLV G  DI +T DG T++K M++Q+PTA ++  TA   D   GDGTTS V+  G L++++E  +++ +HP V+++G+  A  ++L+ L+     +      D++I+  +  TTL + +
Sbjct:   21 NIAVAKILLEMLKSSLGPKGLDKMLVEGQ-DITITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALSSSLELLKSIADKI---SPEDRKIVHDLVYTTLSSKF 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 48/143 (33.57%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  214 AALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            +A   NI A K + + ++T LGP+G  KMLV  +G++ +T DG T+L++M I++P A M+   +  Q++  GDGTT+  +  GEL+  +E  +D+ +HP V+V+G+  A R     ++     V +    D ++L+ VA +++
Sbjct:   23 SAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLDVTL----DDDLLRKVAESSM 161          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  178 VLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            V+N N        A   NI AAK + DV++T LGP+  +KML+   G + LT DG+ +L+E+++ +P A  +   A  QD+  GDGTTS +I  GE++  +   +D  +HP V++  F+ A    L  +++   PV + D  + E+ +++ RT + T     W
Sbjct:    7 VMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDD--NAEMFRLI-RTCIGTKLVARW 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 55/162 (33.95%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  196 EVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN--HWQIS 675
            E L    A   +I AAK + +++K++LGPKG  KM+V   G++ +T DG T+L+ MQ+ N  A ++ + + +QDD  GDGTT  V+  G L++Q+E+ I++G+HP  + +G+E A +   + L+     +    +  + ++K  A T L +   N  H Q+S
Sbjct:   22 ERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEFSKDNIEPLIK-TAMTCLGSKIVNRFHRQMS 182          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPE_ARATH1.377e-2138.19T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
THSA_HALSA3.069e-2135.67Thermosome subunit alpha OS=Halobacterium salinari... [more]
TCPD_YARLI4.008e-2132.88T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
TCPE_CAEEL5.234e-2136.00T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPD_CAEEL5.234e-2135.71T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
THSG_SULSO8.928e-2137.32Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
THSG_SULSH8.928e-2138.03Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
THS3_HALVO8.928e-2133.57Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPG_SCHPO1.166e-2033.13T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPE_DICDI1.523e-2033.95T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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