FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI AA+ + D ++T+LGPKG  KM+  G G++ LT DG T+LK + + +P A M+   + AQD  +GDGTTS VI  G ++  +E+ + +G+HP V+ + F+ A   T+  +++    + +    D+E L   A T+L +   + +
Sbjct:   24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIELS---DRESLLRAATTSLNSKIVSQY 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 51/165 (30.91%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  172 LRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            + VLN   +      A   NI AA+ + D++++ LGP+  +KML+   G I +T DGN +L+E+ + +PTA  +   + A D+  GDGTTS +I  GE++  +E  +   +HP ++V G+  A +  L   E++   V   D  D E +K + ++ +   +++ W
Sbjct:    9 IMVLNSKTQRSTGRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVV---DVHDSERVKSLVQSCIGAKFSSRW 170          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 50/165 (30.30%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  172 LRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            + VLN N +  +   A   NI+A+K + +++ + LGP+  +KML+   G I +T DGN +L+E+ + +P A  +   A  QD+  GDGTTS +I  GE+M  ++  I+  +HP ++V  +  A   +++ +E+   P+ + +  D ++ K ++ + + T +T+ W
Sbjct:    9 IMVLNQNTKRESGKKAQLANISASKAVSEIVTSTLGPRSMLKMLLDPMGGIVMTNDGNAILREIDVNHPAAKSMIELARVQDEEVGDGTTSVIIMAGEMMSAAKPFIERDIHPSIIVTAYYRALEESIKKIEELAVPIDVNN--DDQVNKALS-SCIGTKFTSRW 170          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            NI AAK +  +L+T+LGPKG  KML    GD+ +T DG T+L+ M + N  A ++   + +QD   GDGTT  V+  G L++Q+E+ ++ G+HP  + +G+E+A R  +  LE   T        D E L     TTL
Sbjct:   33 NIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEF-SATDIEPLVQTCMTTL 169          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 55/163 (33.74%), Postives = 96/163 (58.90%), Query Frame = 1
Query:  166 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGG----AGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            + +++L  NA+     +A   +   A  + D++K+ LGPKG  K+L+ G    AG IK+T DG T+LK + + NP A ++   ++ QD   GDGTTS  +   EL+K++E+ +++ +HP+ ++ G+  A     + L+  K+ +  GD    ++LK +ARTTL
Sbjct:    2 LPVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLK--KSSIESGDNIRDDLLK-IARTTL 161          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 53/163 (32.52%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  178 VLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            VLN NA+  N+  A      A K +  ++KT LGPK  +KM++   G   +T DGN +L+E+ + +P A  +   + AQD+  GDGTTS VI   E++  SE  I++ +HP  ++  F +A   +L  ++++   + + + P  E+LK+V ++ + T +   W
Sbjct:    7 VLNTNAKRENQKEAQQGIFLAVKSVASIIKTCLGPKAMLKMILDPMGTTVVTNDGNAILREIDVTHPAAKSMIELSRAQDENVGDGTTSVVILAAEVLASSELFIEKKIHPHYIIKAFRMALDDSLSIVDQYSVAIDLKNRP--EVLKVV-QSCIGTKFIGKW 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            NI AA+ + D ++T+LGPKG  KM+    G+I ++ DG+T+LK+M I +P A M+   + AQD  +GDGTTS VI  G L+  +E+ + +G+HP ++ + F+ A +  ++ L      + + D  +   L   A T+L +   + +
Sbjct:   25 NIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKRISLQDRAE---LVRAASTSLSSKIVSQY 167          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 47/138 (34.06%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+L+ +++++P A ++   A  QD+  GDGTTS VI   EL+K ++  + + +HP  ++ G+ IA +   +++ +  T  V  DE  ++ L  +A+T++
Sbjct:   24 NVMAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPV--DELGRDSLINIAKTSM 159          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            NI A K +  +L+T+LGPKG  KML    GD+ +T DG T+L+ M + N  A ++   + +QD   GDGTT  V+  G L++Q+E+ ++ G+HP  + +G+E+A R  +  LE   T        D E L     TTL
Sbjct:   33 NIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEF-SATDIEPLVQTCMTTL 169          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 47/138 (34.06%), Postives = 84/138 (60.87%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ A   + +++K++LGP+G  KMLV   GD+ +T DG T+L+++++Q+P A +I   +  QD   GDGTTS VI   EL+K++   I   +HP  ++ GF+IA +    ++++     +  +E  +E L   A+T++
Sbjct:   21 NVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTYIKEHL--AISVEELGREALINAAKTSM 156          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPD_SCHPO1.523e-2034.93T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPG_THAWE2.598e-2030.91T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_TETPY2.598e-2030.30T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPE1_AVESA2.598e-2038.41T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPB_CAEEL2.598e-2033.74T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPG_DICDI4.431e-2032.52T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPD_ASHGO5.787e-2034.25T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPA_DROME7.558e-2034.06T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPE2_AVESA9.871e-2037.68T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPA_TETPY9.871e-2034.06T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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