FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  ++  DE  ++ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIN--ENLIINADELGRDCLTNTAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 46/140 (32.86%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  223 HMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            + N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K S+  + + +HP  ++ G+ +A +  ++++   +  ++  DE  ++ L   A+T++
Sbjct:   22 NQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYIN--ENLIINTDELGRDCLINSAKTSM 159          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 46/138 (33.33%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  ++  DE  K+ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYIN--ENLIINTDELGKDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  181 LNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQ-SERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNHW 666
            +N + E      A   NI AAK + DV++T LGPK  +KML+   G + LT DG+ +L+E+ + +P A  +   +  QD+  GDGTT+ +I  GE++ Q +   I++ +HP +++   + A    L+ +++   PV   D  +   +K + + ++ T Y  HW
Sbjct:    8 MNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPV---DVENDAAMKKLIQASIGTKYVIHW 167          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 48/142 (33.80%), Postives = 88/142 (61.97%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            A+  +I A K + ++++T+LGP+G  K+L+   G+I +T DG T+L +M++++  A ++ + + +QDD  GDGTT  V+  G L++Q+E  ID+G+HP  + DG+E A +  ++ L+     V    E    + +  A+T+L
Sbjct:   35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRS-AKTSL 175          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 46/138 (33.33%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  +V  DE  ++ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIN--ENLIVNTDELGRDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  ++  DE  ++ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIN--ENLIINTDELGRDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  ++  DE  ++ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIS--ENLIINTDELGRDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            N+ AA  + +++K++LGP G  KMLV   GD+ +T DG T+LK +++++P A ++   A  QD   GDGTTS VI   EL+K ++  + + +HP  ++ G+ +A +  ++++   +  ++  DE  ++ L   A+T++
Sbjct:   21 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIS--ENLIINTDELGRDCLINAAKTSM 156          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 50/148 (33.78%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLR----TSYTN 660
            NI AA+ + D ++T+LGPKG  KM++    ++ ++ DG T+L+ +++++P A M+A  A AQD  +GDGTTS  +  G L+    + + +G+HP ++ + F +A   +L+ L     PV +    D+  L   A T+L     + YTN
Sbjct:   31 NIVAARAVADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVLVSMSVPVSL---TDRVSLVKSATTSLNSKVVSQYTN 175          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPA1_MOUSE1.684e-1932.61T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPA_PALPA2.199e-1932.86T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_MONDO2.199e-1933.33T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPG_YEAST2.872e-1931.29T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPE_SCHPO2.872e-1933.80T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPA_HUMAN3.751e-1933.33T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_RAT4.899e-1932.61T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CRIGR4.899e-1932.61T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_BOVIN4.899e-1932.61T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPD_DICDI6.398e-1933.78T-complex protein 1 subunit delta OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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