FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.913e-44 Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 1 Query: 193 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + + GLK + + K + +S SNG + CM W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E G+V+RE+ R PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KK Sbjct: 24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKK 149 HSP 2 Score: 40.0466 bits (92), Expect = 1.913e-44 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.914e-44 Identity = 73/123 (59.35%), Postives = 91/123 (73.98%), Query Frame = 1 Query: 205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN R PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KK Sbjct: 32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKK 152 HSP 2 Score: 39.2762 bits (90), Expect = 1.914e-44 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++IR + F+N +Q QC+SF+ KP Sbjct: 151 KKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.916e-44 Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142 HSP 2 Score: 38.5058 bits (88), Expect = 1.916e-44 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.917e-44 Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 1 Query: 148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 P M AS TA + GLK T A LPV + S VSNG + RCM+ W NKKFE LSYLP LS D + K++DY+L+ GWIPCLEF +VG+V+RENS P YYDGRYWTMWKLPMFGCND++Q+ E+QE K Sbjct: 3 PTVMMASSATAVAP---FQGLKST--ASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIK 138 HSP 2 Score: 37.7354 bits (86), Expect = 1.917e-44 Identity = 15/29 (51.72%), Postives = 22/29 (75.86%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 K+YP+A+ R + F+N KQ QC+SF+ KP Sbjct: 138 KSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.495e-44 Identity = 70/125 (56.00%), Postives = 95/125 (76.00%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149 HSP 2 Score: 40.0466 bits (92), Expect = 2.495e-44 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 3.251e-44 Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK +S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN R PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KK Sbjct: 30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKK 152 HSP 2 Score: 39.2762 bits (90), Expect = 3.251e-44 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++IR + F+N +Q QC+SF+ KP Sbjct: 151 KKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 3.252e-44 Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 150 HSP 2 Score: 39.6614 bits (91), Expect = 3.252e-44 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A++R + F+N +Q QC+SF+ KP Sbjct: 149 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.254e-44 Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142 HSP 2 Score: 38.5058 bits (88), Expect = 3.254e-44 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCVSFIASKP 170
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.239e-44 Identity = 71/125 (56.80%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S A P S SNG + +CMK W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 25 FTGLK--SNAAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 147 HSP 2 Score: 38.5058 bits (88), Expect = 4.239e-44 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 9.378e-44 Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149 HSP 2 Score: 39.6614 bits (91), Expect = 9.378e-44 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A++R + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |