FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.913e-44
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  193 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + + GLK  +   +  K  +  +S   SNG +  CM  W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E G+V+RE+ R PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KK
Sbjct:   24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKK 149          

HSP 2 Score: 40.0466 bits (92), Expect = 1.913e-44
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.914e-44
Identity = 73/123 (59.35%), Postives = 91/123 (73.98%), Query Frame = 1
Query:  205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            GLK  S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN R PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KK
Sbjct:   32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKK 152          

HSP 2 Score: 39.2762 bits (90), Expect = 1.914e-44
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP ++IR + F+N +Q QC+SF+  KP
Sbjct:  151 KKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.916e-44
Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK
Sbjct:   20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142          

HSP 2 Score: 38.5058 bits (88), Expect = 1.916e-44
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.917e-44
Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 1
Query:  148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            P  M AS  TA      + GLK T  A LPV    + S   VSNG + RCM+ W    NKKFE LSYLP LS D + K++DY+L+ GWIPCLEF +VG+V+RENS  P YYDGRYWTMWKLPMFGCND++Q+  E+QE  K
Sbjct:    3 PTVMMASSATAVAP---FQGLKST--ASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIK 138          

HSP 2 Score: 37.7354 bits (86), Expect = 1.917e-44
Identity = 15/29 (51.72%), Postives = 22/29 (75.86%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            K+YP+A+ R + F+N KQ QC+SF+  KP
Sbjct:  138 KSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.495e-44
Identity = 70/125 (56.00%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 40.0466 bits (92), Expect = 2.495e-44
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.251e-44
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK +S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN R PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KK
Sbjct:   30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKK 152          

HSP 2 Score: 39.2762 bits (90), Expect = 3.251e-44
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP ++IR + F+N +Q QC+SF+  KP
Sbjct:  151 KKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.252e-44
Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN+  PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 150          

HSP 2 Score: 39.6614 bits (91), Expect = 3.252e-44
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  149 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.254e-44
Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+  PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK
Sbjct:   20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142          

HSP 2 Score: 38.5058 bits (88), Expect = 3.254e-44
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  141 KKEYPQAWIRIIGFDNVRQVQCVSFIASKP 170          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.239e-44
Identity = 71/125 (56.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  S A  P        S   SNG + +CMK W P+  KK+E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK
Sbjct:   25 FTGLK--SNAAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 147          

HSP 2 Score: 38.5058 bits (88), Expect = 4.239e-44
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 9.378e-44
Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 9.378e-44
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_CAPAN1.913e-4456.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.914e-4459.35Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FLAPR1.916e-4456.80Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MAIZE1.917e-4456.74Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSA_SOLTU2.495e-4456.00Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_MALSP3.251e-4458.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLLC3.252e-4456.00Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_FLATR3.254e-4456.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_FLAPR4.239e-4456.80Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3B_SOLLC9.378e-4456.80Ribulose bisphosphate carboxylase small chain 3B, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
back to top