FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 9.378e-44 Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149 HSP 2 Score: 39.6614 bits (91), Expect = 9.378e-44 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A++R + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 1.222e-43 Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 1 Query: 160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SA++ T+P + + GLK S A PV ++ SNG + CMK W PI KKFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147 HSP 2 Score: 38.891 bits (89), Expect = 1.222e-43 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.223e-43 Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + A PV + S SNG + +CMK W P+ KK+ LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS Q++ E+QECKK Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKK 142 HSP 2 Score: 38.5058 bits (88), Expect = 1.223e-43 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 1.593e-43 Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK ++ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 26 FTGLKSSATFPVTKKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149 HSP 2 Score: 39.6614 bits (91), Expect = 1.593e-43 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A++R + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.593e-43 Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 1 Query: 160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SA++ T+ + + + GLK S A PV ++ SNG + CMK W PI KKFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK Sbjct: 8 SAAVVTSQLQATMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKK 147 HSP 2 Score: 40.0466 bits (92), Expect = 1.593e-43 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YPNA IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPNALIRIIGFDNNRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.593e-43 Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 220 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 S A PV A SSK SNG + RCM+ W P KKFE LSYLP L+ + + +E+DY+++ GWIPC+EF +VG+V+RE PGYYDGRYWTMWKLPMFGC DSSQ+L E+ EC K Sbjct: 31 SSAAFPVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147 HSP 2 Score: 36.5798 bits (83), Expect = 1.593e-43 Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KAYP+ + R + F+N +Q QC+SFL KP Sbjct: 147 KAYPDYFNRIIGFDNTRQVQCISFLTYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.593e-43 Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 1 Query: 160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 S ++ T AG+G + GLK S A LP + + + SNG + +CM+ W P+ KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE++R GYYDGRYWTMWKLPMFGC D+SQ+L E+QE K Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGLPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146 HSP 2 Score: 38.891 bits (89), Expect = 1.593e-43 Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 3 Query: 570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 AYPN +IR + F+N +Q QC+SF+ KP Sbjct: 148 AYPNGFIRIIGFDNVRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.593e-43 Identity = 76/141 (53.90%), Postives = 99/141 (70.21%), Query Frame = 1 Query: 160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 S ++ T AG+G + GLK S A P + + + SNG + +CM+ W PI KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE++R P YYDGRYWTMWKLPMFGC D+SQ+L E+QE K Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146 HSP 2 Score: 38.891 bits (89), Expect = 1.593e-43 Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 3 Query: 570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 AYPN +IR + F+N +Q QC+SF+ KP Sbjct: 148 AYPNGFIRIIGFDNVRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.705e-43 Identity = 67/125 (53.60%), Postives = 95/125 (76.00%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS++ + +E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 27 FTGLKSATSFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 150 HSP 2 Score: 40.0466 bits (92), Expect = 2.705e-43 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 149 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.706e-43 Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S P S SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 25 FTGLK--SNVAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 147 HSP 2 Score: 38.5058 bits (88), Expect = 2.706e-43 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 175 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |