FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 9.378e-44
Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 9.378e-44
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.222e-43
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 1
Query:  160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SA++ T+P   +    + GLK  S A  PV         ++ SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK
Sbjct:    8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147          

HSP 2 Score: 38.891 bits (89), Expect = 1.222e-43
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.223e-43
Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+  LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS Q++ E+QECKK
Sbjct:   20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKK 142          

HSP 2 Score: 38.5058 bits (88), Expect = 1.223e-43
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.593e-43
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK ++   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK
Sbjct:   26 FTGLKSSATFPVTKKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 1.593e-43
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.593e-43
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 1
Query:  160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SA++ T+ +  +    + GLK  S A  PV         ++ SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK
Sbjct:    8 SAAVVTSQLQATMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKK 147          

HSP 2 Score: 40.0466 bits (92), Expect = 1.593e-43
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YPNA IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPNALIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.593e-43
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  220 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            S A  PV    A SSK  SNG + RCM+ W P   KKFE LSYLP L+ + + +E+DY+++ GWIPC+EF +VG+V+RE    PGYYDGRYWTMWKLPMFGC DSSQ+L E+ EC K
Sbjct:   31 SSAAFPVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147          

HSP 2 Score: 36.5798 bits (83), Expect = 1.593e-43
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            KAYP+ + R + F+N +Q QC+SFL  KP
Sbjct:  147 KAYPDYFNRIIGFDNTRQVQCISFLTYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.593e-43
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 1
Query:  160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            S ++ T   AG+G    + GLK  S A LP + +    +   SNG + +CM+ W P+  KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE++R  GYYDGRYWTMWKLPMFGC D+SQ+L E+QE K
Sbjct:    8 SPAVTTVNRAGAGMVAPFTGLK--SMAGLPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146          

HSP 2 Score: 38.891 bits (89), Expect = 1.593e-43
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            AYPN +IR + F+N +Q QC+SF+  KP
Sbjct:  148 AYPNGFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.593e-43
Identity = 76/141 (53.90%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            S ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W PI  KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE++R P YYDGRYWTMWKLPMFGC D+SQ+L E+QE K
Sbjct:    8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146          

HSP 2 Score: 38.891 bits (89), Expect = 1.593e-43
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            AYPN +IR + F+N +Q QC+SF+  KP
Sbjct:  148 AYPNGFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.705e-43
Identity = 67/125 (53.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS++ + +E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:   27 FTGLKSATSFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 150          

HSP 2 Score: 40.0466 bits (92), Expect = 2.705e-43
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  149 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.706e-43
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  S    P        S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK
Sbjct:   25 FTGLK--SNVAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 147          

HSP 2 Score: 38.5058 bits (88), Expect = 2.706e-43
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 175          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS3A_SOLLC9.378e-4456.80Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS3B_ARATH1.222e-4353.52Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS6_FLAPR1.223e-4356.00Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS2A_SOLLC1.593e-4356.00Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_RAPSA1.593e-4353.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE1.593e-4358.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_SOYBN1.593e-4353.90Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_SOYBN1.593e-4353.90Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_NICSY2.705e-4353.60Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS2_FLAPR2.706e-4355.20Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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