FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.707e-43
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK T  A LPV      SS +VSNG + RCM+ W     KKFE LSYLP LS +++ K++DY+++  W+PCLEF +VG++ RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK
Sbjct:   16 FQGLKST--AGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKK 137          

HSP 2 Score: 41.5874 bits (96), Expect = 2.707e-43
Identity = 16/31 (51.61%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V+K YP+AY+R + F+N +Q QC+SF+  KP
Sbjct:  135 VKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.525e-43
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 1
Query:  160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SA++ T+P   +    + GLK ++   +  K +   +S T SNG +  CMK W PI  KKFE LSYLP L+D  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK
Sbjct:    8 SAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147          

HSP 2 Score: 38.891 bits (89), Expect = 3.525e-43
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.593e-43
Identity = 74/141 (52.48%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            S ++ T+P   +    + GLK ++   +  K +   +S T SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK
Sbjct:    8 STAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147          

HSP 2 Score: 38.891 bits (89), Expect = 4.593e-43
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.593e-43
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1
Query:  262 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            S   SNG + +CMK W PI  KK+E LSYLP LSD++++KEIDY+++  WIPCLEF+ E G+V+RE+   PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK
Sbjct:   46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKK 149          

HSP 2 Score: 41.9726 bits (97), Expect = 4.593e-43
Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YPNA+IR + F+N +Q QC+SF++ KP
Sbjct:  148 KKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.595e-43
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 1
Query:  160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            S ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W     KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ R PGYYDGRYWTMWKLPMFGC D+SQ+L E+QE K
Sbjct:    8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146          

HSP 2 Score: 40.4318 bits (93), Expect = 4.595e-43
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            AYPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  148 AYPNAFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.985e-43
Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+RE++  PGYYDGRYWTMWKLPMFGC D +Q+L E+QE K
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAK 149          

HSP 2 Score: 38.1206 bits (87), Expect = 5.985e-43
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            + AYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  149 KNAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.796e-43
Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG + +CM+ W P+  KKFE LSYLP LS + +AKE+DY+L+K  IPCLEF+ E G+V+RE++R PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKK
Sbjct:   52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKK 151          

HSP 2 Score: 38.1206 bits (87), Expect = 7.796e-43
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A+IR + F+N++Q Q +SF+  KP
Sbjct:  150 KKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.799e-43
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + +  E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 40.0466 bits (92), Expect = 7.799e-43
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.799e-43
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + +  E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 40.0466 bits (92), Expect = 7.799e-43
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.017e-42
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 1
Query:  160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            S ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W     KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+REN R PGYYDGRYWTMWKLP+FGC D+SQ+L E+QE K
Sbjct:    8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAK 146          

HSP 2 Score: 38.891 bits (89), Expect = 1.017e-42
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            AYPN +IR + F+N +Q QC+SF+  KP
Sbjct:  148 AYPNGFIRIIGFDNVRQVQCISFIAYKP 175          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_HORVU2.707e-4355.65Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1B_ARATH3.525e-4352.48Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS2B_ARATH4.593e-4352.48Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS_LACSA4.593e-4362.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA4.595e-4353.19Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS0_SOLTU5.985e-4354.84Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_BETVE7.796e-4367.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TOBAC7.799e-4353.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY7.799e-4353.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO1.017e-4253.19Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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