FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.707e-43 Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T A LPV SS +VSNG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK Sbjct: 16 FQGLKST--AGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKK 137 HSP 2 Score: 41.5874 bits (96), Expect = 2.707e-43 Identity = 16/31 (51.61%), Postives = 24/31 (77.42%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V+K YP+AY+R + F+N +Q QC+SF+ KP Sbjct: 135 VKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.525e-43 Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 1 Query: 160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SA++ T+P + + GLK ++ + K + +S T SNG + CMK W PI KKFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK Sbjct: 8 SAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147 HSP 2 Score: 38.891 bits (89), Expect = 3.525e-43 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 4.593e-43 Identity = 74/141 (52.48%), Postives = 99/141 (70.21%), Query Frame = 1 Query: 160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 S ++ T+P + + GLK ++ + K + +S T SNG + CMK W PI KKFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK Sbjct: 8 STAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147 HSP 2 Score: 38.891 bits (89), Expect = 4.593e-43 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 4.593e-43 Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1 Query: 262 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 S SNG + +CMK W PI KK+E LSYLP LSD++++KEIDY+++ WIPCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK Sbjct: 46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKK 149 HSP 2 Score: 41.9726 bits (97), Expect = 4.593e-43 Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YPNA+IR + F+N +Q QC+SF++ KP Sbjct: 148 KKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 4.595e-43 Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 1 Query: 160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 S ++ T AG+G + GLK S A P + + + SNG + +CM+ W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ R PGYYDGRYWTMWKLPMFGC D+SQ+L E+QE K Sbjct: 8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146 HSP 2 Score: 40.4318 bits (93), Expect = 4.595e-43 Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 3 Query: 570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 AYPNA+IR + F+N +Q QC+SF+ KP Sbjct: 148 AYPNAFIRIIGFDNVRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 5.985e-43 Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 + GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D +Q+L E+QE K Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAK 149 HSP 2 Score: 38.1206 bits (87), Expect = 5.985e-43 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 + AYP A+IR + F+N +Q QC+SF+ KP Sbjct: 149 KNAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 7.796e-43 Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + +CM+ W P+ KKFE LSYLP LS + +AKE+DY+L+K IPCLEF+ E G+V+RE++R PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKK Sbjct: 52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKK 151 HSP 2 Score: 38.1206 bits (87), Expect = 7.796e-43 Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A+IR + F+N++Q Q +SF+ KP Sbjct: 150 KKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.799e-43 Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149 HSP 2 Score: 40.0466 bits (92), Expect = 7.799e-43 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.799e-43 Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149 HSP 2 Score: 40.0466 bits (92), Expect = 7.799e-43 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.017e-42 Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 1 Query: 160 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 S ++ T AG+G + GLK S A P + + + SNG + +CM+ W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+REN R PGYYDGRYWTMWKLP+FGC D+SQ+L E+QE K Sbjct: 8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAK 146 HSP 2 Score: 38.891 bits (89), Expect = 1.017e-42 Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 3 Query: 570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 AYPN +IR + F+N +Q QC+SF+ KP Sbjct: 148 AYPNGFIRIIGFDNVRQVQCISFIAYKP 175 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |