FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.484e-42
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            ++GLK  S +  PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N++ PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK
Sbjct:   28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKK 150          

HSP 2 Score: 40.4318 bits (93), Expect = 6.484e-42
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+++KP
Sbjct:  149 KKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.449e-42
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + +  EI+Y+LK GW+PCLEF+ E G+V+RE+   PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 8.449e-42
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.867e-41
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK ++   +  K+++  ++   SN  K +CMK W P+  +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD   G+V+REN R PG+YDGRYWTMWKLPMFGC DSSQ++ EI+E KK
Sbjct:   28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKK 151          

HSP 2 Score: 38.891 bits (89), Expect = 1.867e-41
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP+A+IR + F+N +Q QC+SF+  KP
Sbjct:  150 KKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.868e-41
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  S   +  K S   S+   SNG K +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK
Sbjct:   30 FTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 153          

HSP 2 Score: 40.4318 bits (93), Expect = 1.868e-41
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  152 KKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.871e-41
Identity = 72/142 (50.70%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVK-DSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            P  M++S  T     + + GLK T  A LP+   S +    +VSNG + RCM+ W     KKFE LSYLP LS +++ K++DY+++  W+PCLEF +VG+V RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK
Sbjct:    3 PAVMASSATTV----APFQGLKST--AGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKK 138          

HSP 2 Score: 40.4318 bits (93), Expect = 1.871e-41
Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V+K YP+AY+R + F+N +Q QC+SF+  +P
Sbjct:  136 VKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.436e-41
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYWTMWKLPMFGC D++Q+L E+QE KK
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKK 149          

HSP 2 Score: 42.3578 bits (98), Expect = 2.436e-41
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.173e-41
Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG + +CM+ W P+  KKFE LSYLP L+   +AKE+DY+L+  WIPCLEF+ E G+VHR+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK
Sbjct:   52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKK 151          

HSP 2 Score: 40.817 bits (94), Expect = 3.173e-41
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  150 KKEYPNAFIRIIGFDNVRQVQCISFIAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 5.387e-41
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            GLK  S A  PV       +   +NG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK
Sbjct:   29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 149          

HSP 2 Score: 40.4318 bits (93), Expect = 5.387e-41
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.387e-41
Identity = 72/144 (50.00%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  160 SASIFTAPVAGSG------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            +A   TA  AG+       + GLK  +   +  K S  +SS   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L KGWIPC+EF+ E  +V+REN R PGY DGRYWTMWKLPM+GC D +Q+LNE++E KK
Sbjct:    9 AAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 151          

HSP 2 Score: 41.9726 bits (97), Expect = 5.387e-41
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A+IR + F+N++Q QC+SF+  KP
Sbjct:  150 KKAYPSAFIRIIGFDNKRQVQCVSFIAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.019e-41
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK
Sbjct:   30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 150          

HSP 2 Score: 40.4318 bits (93), Expect = 7.019e-41
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  149 KKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS3_FRIAG6.484e-4253.60Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS8_NICPL8.449e-4253.60Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_CUCSA1.867e-4152.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR1.868e-4154.40Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS2_WHEAT1.871e-4150.70Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS2_PETHY2.436e-4152.80Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_GOSHI3.173e-4162.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR5.387e-4153.66Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_AMAHP5.387e-4150.00Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_MESCR7.019e-4153.66Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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