FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 6.484e-42 Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 ++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYWTMWKLPMFGC D++Q++ E ECKK Sbjct: 28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKK 150 HSP 2 Score: 40.4318 bits (93), Expect = 6.484e-42 Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+++KP Sbjct: 149 KKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 8.449e-42 Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + EI+Y+LK GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149 HSP 2 Score: 39.6614 bits (91), Expect = 8.449e-42 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A++R + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.867e-41 Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK ++ + K+++ ++ SN K +CMK W P+ +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD G+V+REN R PG+YDGRYWTMWKLPMFGC DSSQ++ EI+E KK Sbjct: 28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKK 151 HSP 2 Score: 38.891 bits (89), Expect = 1.867e-41 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP+A+IR + F+N +Q QC+SF+ KP Sbjct: 150 KKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.868e-41 Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S + K S S+ SNG K +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK Sbjct: 30 FTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 153 HSP 2 Score: 40.4318 bits (93), Expect = 1.868e-41 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 152 KKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.871e-41 Identity = 72/142 (50.70%), Postives = 99/142 (69.72%), Query Frame = 1 Query: 148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVK-DSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 P M++S T + + GLK T A LP+ S + +VSNG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKK 138 HSP 2 Score: 40.4318 bits (93), Expect = 1.871e-41 Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V+K YP+AY+R + F+N +Q QC+SF+ +P Sbjct: 136 VKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.436e-41 Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKK 149 HSP 2 Score: 42.3578 bits (98), Expect = 2.436e-41 Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYPNA+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 3.173e-41 Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VHR+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKK 151 HSP 2 Score: 40.817 bits (94), Expect = 3.173e-41 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 150 KKEYPNAFIRIIGFDNVRQVQCISFIAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 5.387e-41 Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 1 Query: 205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 GLK S A PV + +NG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK Sbjct: 29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 149 HSP 2 Score: 40.4318 bits (93), Expect = 5.387e-41 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.387e-41 Identity = 72/144 (50.00%), Postives = 95/144 (65.97%), Query Frame = 1 Query: 160 SASIFTAPVAGSG------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 +A TA AG+ + GLK + + K S +SS SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L KGWIPC+EF+ E +V+REN R PGY DGRYWTMWKLPM+GC D +Q+LNE++E KK Sbjct: 9 AAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 151 HSP 2 Score: 41.9726 bits (97), Expect = 5.387e-41 Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A+IR + F+N++Q QC+SF+ KP Sbjct: 150 KKAYPSAFIRIIGFDNKRQVQCVSFIAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 7.019e-41 Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1 Query: 205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK Sbjct: 30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 150 HSP 2 Score: 40.4318 bits (93), Expect = 7.019e-41 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 149 KKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |