FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 7.021e-41 Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKK 149 HSP 2 Score: 42.3578 bits (98), Expect = 7.021e-41 Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYPNA+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 9.153e-41 Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG K CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK Sbjct: 50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148 HSP 2 Score: 38.891 bits (89), Expect = 9.153e-41 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++R + F+N++Q QC+SF+ KP Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.192e-40 Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1 Query: 205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 GLK S A PV + SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L KGWIPC+EF+ E +V+REN R PGY DGRYWTMWKLPM+GC D +Q+LNE++E KK Sbjct: 32 GLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 152 HSP 2 Score: 41.5874 bits (96), Expect = 1.192e-40 Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N++Q QC+SF+ KP Sbjct: 151 KKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.192e-40 Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK Sbjct: 25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 147 HSP 2 Score: 38.5058 bits (88), Expect = 1.192e-40 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+ R + F+N +Q QC+SF+ KP Sbjct: 146 KKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.553e-40 Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1 Query: 262 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK Sbjct: 47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 150 HSP 2 Score: 40.4318 bits (93), Expect = 1.553e-40 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 149 KKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.023e-40 Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T+ A + S + SNG + +CMK W P+ +KFE LSYLP LS +S+AK+I+Y++ KGWIPCLEF+ E +V+REN+R PGYYDGRYW MWKLPMFGC D++Q+L E+QE K Sbjct: 28 FTGLKSTA-AFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASK 151 HSP 2 Score: 38.1206 bits (87), Expect = 2.023e-40 Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 K YP ++IR + F+N++Q QC+SF+ KP Sbjct: 151 KTYPTSHIRIIGFDNKRQVQCISFIAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.024e-40 Identity = 71/147 (48.30%), Postives = 93/147 (63.27%), Query Frame = 1 Query: 157 MSASIFTAPVAGSG--------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + ++ TA V SG + GLK S A PV + SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L GWIPC+EF+ E +V+REN R PGY DGRYWTMWKLPM+GC D +Q+LNE++E KK Sbjct: 5 LMSNAITAVVGASGAQANMVAPFNGLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 149 HSP 2 Score: 41.2022 bits (95), Expect = 2.024e-40 Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A+IR + F+N++Q QC+SF+ KP Sbjct: 148 KKAYPSAFIRIIGFDNKRQVQCVSFIAFKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.025e-40 Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148 HSP 2 Score: 38.891 bits (89), Expect = 2.025e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++R + F+N++Q QC+SF+ KP Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.025e-40 Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148 HSP 2 Score: 38.891 bits (89), Expect = 2.025e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++R + F+N++Q QC+SF+ KP Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.025e-40 Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148 HSP 2 Score: 38.891 bits (89), Expect = 2.025e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++R + F+N++Q QC+SF+ KP Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |