FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28
Identity = 74/117 (63.25%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+KL  P  + LALYDIA  TPGVA DV HI T   V G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV+ L   +A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAITCPKACVGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IA  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACVGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV +LGA+GGIGQPL+LL+KL+ P  S L+LYD+A  TPGVA D+ HI T  EV G+ G+D   +AL+ +D+V+I AGV RKPGMTR DLFN+NAGI+++L   +A+ CP A V +I
Sbjct:    2 KVTLLGASGGIGQPLSLLLKLHLPAESDLSLYDVAPVTPGVAKDISHIPTSVEVEGFGGDDP-SEALKGADIVLICAGVARKPGMTRADLFNVNAGIIQNLVEKVAQVCPQACVCII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.455e-28
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV RKPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.455e-28
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA   PGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV++L    A  CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVIPGVAVDLSHIPTAVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.455e-28
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IA  CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFAGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.455e-28
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE ++VV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGANVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.207e-28
Identity = 73/117 (62.39%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV++ AGV RKPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPT-PALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKIAVVCPKACVGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.207e-28
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV RKPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.207e-28
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV RKPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_HAEI81.880e-2863.25Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_CITK81.880e-2861.54Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_ACTSZ1.880e-2857.26Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_SHEON2.455e-2860.68Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]
MDH_SHEHH2.455e-2860.68Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_ESCF32.455e-2860.68Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDH_ECOLU2.455e-2859.83Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_VIBCH3.207e-2862.39Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SHESR3.207e-2860.68Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESM3.207e-2860.68Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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