FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.188e-28
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G +    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IA+ CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-ENARPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACVGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ERWT9 (Malate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.469e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV VLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++AG+ G D    AL+ +DVV+I AGV RKPGM R DLFN+NAGIV++L   +A  CP A++ +I
Sbjct:    2 KVTVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTSVKIAGFSGEDAT-PALKGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEQVAATCPKALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.469e-28
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +A  CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAK-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLIQQVATTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERE8 (Malate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.330e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALKGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPKALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.330e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+KL  P  S L+LYD+A  TPGVA D+ HI T   V G+ G D   +AL+ +D+V+I AGV RKPGMTR DLF +NAGI++ L   +A+ CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSSLSLYDVAPVTPGVAKDLSHIPTDVVVEGFAGTDP-SEALKGADIVLISAGVARKPGMTRADLFGVNAGIIRSLTEKVAEQCPKACVGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ACTPJ (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.330e-28
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVA+LGAAGGIGQ LALL+KL  P+ + LALYDI+  TPG+A D+ HI T     GY G D   +AL+ +++VII AGV RKPGMTR DLFNINA IVK+L   +A+ CP A + ++
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDP-SEALKGANLVIITAGVARKPGMTRADLFNINADIVKNLVEKVAEVCPKACIGIV 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ACTP7 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.330e-28
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVA+LGAAGGIGQ LALL+KL  P+ + LALYDI+  TPG+A D+ HI T     GY G D   +AL+ +++VII AGV RKPGMTR DLFNINA IVK+L   +A+ CP A + ++
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDP-SEALKGANLVIITAGVARKPGMTRADLFNINADIVKNLVEKVAEVCPKACIGIV 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ACTP2 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.330e-28
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVA+LGAAGGIGQ LALL+KL  P+ + LALYDI+  TPG+A D+ HI T     GY G D   +AL+ +++VII AGV RKPGMTR DLFNINA IVK+L   +A+ CP A + ++
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDP-SEALKGANLVIITAGVARKPGMTRADLFNINADIVKNLVEKVAEVCPKACIGIV 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.218e-27
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV++L    A   P A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATSPKALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_PSYIN (Malate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.591e-27
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K+AVLGAAGGIGQ LALL+KL+ P  S L+LYD+A  TPGVA D+ HI T  +V G+ G D    A+E +DV++I AGV RKPGM R DLFNINAGI+K+L + +A+  P A + +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLDLPANSILSLYDLAPVTPGVAKDLSHIPTSVKVEGFAGTDPTA-AIEGADVILISAGVARKPGMDRSDLFNINAGIIKNLVAKVAEVAPEACIGII 117
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_ENT384.188e-2860.68Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDH_ERWT95.469e-2858.12Malate dehydrogenase OS=Erwinia tasmaniensis (stra... [more]
MDH_ENTS85.469e-2859.83Malate dehydrogenase OS=Enterobacter sakazakii (st... [more]
MDH_YERE89.330e-2858.12Malate dehydrogenase OS=Yersinia enterocolitica se... [more]
MDH_MANSM9.330e-2858.12Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_ACTPJ9.330e-2857.26Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP79.330e-2857.26Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP29.330e-2857.26Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_SHEPW1.218e-2760.68Malate dehydrogenase OS=Shewanella piezotolerans (... [more]
MDH_PSYIN1.591e-2757.26Malate dehydrogenase OS=Psychromonas ingrahamii (s... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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